1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtttctctttctctctatctctgtctctcgccgtttcttttttcctgatctctctcctctttggttcacctcgcagCCCAACAGCTCCAGAAGAAGCACTCCCGATCCGTCTCAGATCTGAGCGATCCATCCACTCCTCGCTTCCGAGACGACTCTCGCACTCCTATTTCGTATGC
species | Arabidopsis thaliana |
transcript | AT5G01020.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGACGAGGCTGCCGTCTTCACTCCTCAAGCTCAAG CCCAACAGCTCCAGAAGAAGCACTCCCGATCCGTACTCAGATCTGAGCGATEST: gi|164178232|gb|ES058180.1|ES058180
genomic: AGACGAGGCTGCCGTCTTCACTCCTCAAGCTCAAGgtttctcttt ... cacctcgcagCCCAACAGCTCCAGAAGAAGCACTCCCGATCCGT-CTCAGATCTGAGCGAT
EST: TAACTGCGGTACTAGAGACGAGGCTGCCGTCTTCACTCCTCAAGCTCAAG CCCAACAGCTCCAGAAGAAGEST: gi|125049977|gb|EL122246.1|EL122246
genomic: -AACTGCGGTACTAGAGACGAGGCTGCCGTCTTCACTCCTCAAGCTCAAGgtttctcttt ... cacctcgcagCCCAACAGCTCCAGAAGAAG
EST: CAACTGCGGTACTAGAGACGAGGCTGCCGTCTTCACTCCTCAAGCTCAAG CCCAACAGCTCCAGAAGAAGCACTCCCGATEST: gi|116406701|gb|EG449293.1|EG449293
genomic: CAACTGCGGTACTAGAGACGAGGCTGCCGTCTTCACTCCTCAAGCTCAAGgtttctcttt ... cacctcgcagCCCAACAGCTCCAGAAGAAGCACTCCCGAT
EST: CAACTGCGGTACTAGAGACGAGGCTGCCGTCTTCACTCCTCAAGCTCAAG CCCAACAGCTCCAGAAGAAGCACTCCCGATCCGTCTCAGATCTGAGCGATCEST: gi|19877960|gb|AU238791.1|AU238791
genomic: CAACTGCGGTACTAGAGACGAGGCTGCCGTCTTCACTCCTCAAGCTCAAGgtttctcttt ... cacctcgcagCCCAACAGCTCCAGAAGAAGCACTCCCGATCCGTCTCAGATCTGAGCGATC
EST: CAACTGCGGTACTAGAGACGAGGCTGCCGTCTTCACTCCTCAAGCTCAAG CCCAACAGCTCCAGAAGAAGCACTCCCGATCCGTCTCAGATCTGAGCGATCEST: gi|124761288|gb|EH851418.1|EH851418
genomic: CAACTGCGGTACTAGAGACGAGGCTGCCGTCTTCACTCCTCAAGCTCAAGgtttctcttt ... cacctcgcagCCCAACAGCTCCAGAAGAAGCACTCCCGATCCGTCTCAGATCTGAGCGATC
EST: CGGTACTAGAGACGAGGCTGCCGTCTTCACTCCTCAAGCTCAAG CCCAACAGCTCCAGAAGAAGCACTCCCGATCCGTCTCAGATEST: gi|116468710|gb|EG511302.1|EG511302
genomic: CGGTACTAGAGACGAGGCTGCCGTCTTCACTCCTCAAGCTCAAGgtttctcttt ... cacctcgcagCCCAACAGCTCCAGAAGAAGCACTCCCGATCCGTCTCAGAT
EST: CAACTGCGGTACTAGAGACGAGGCTGCCGTCTTCACTCCTCAAGCTCAAG CCCAACAGCTCCAGAAGAAGCACTCCCGATCCGTCTCAGATCTGAGCGATCEST: gi|47830578|gb|CK120262.1|CK120262
genomic: CAACTGCGGTACTAGAGACGAGGCTGCCGTCTTCACTCCTCAAGCTCAAGgtttctcttt ... cacctcgcagCCCAACAGCTCCAGAAGAAGCACTCCCGATCCGTCTCAGATCTGAGCGATC
EST: GACGAGGCTGCCGTCTTCACTCCTCAAGCTCAAG CCCAACAGCTCCAGAAGAAGCACTCCCGATCCGTCTCAGATCTGAGCGATCEST: gi|86072125|gb|DR367882.1|DR367882
genomic: GACGAGGCTGCCGTCTTCACTCCTCAAGCTCAAGgtttctcttt ... cacctcgcagCCCAACAGCTCCAGAAGAAGCACTCCCGATCCGTCTCAGATCTGAGCGATC
EST: CAACTGCGGTACTAGAGACGAGGCTGCCGTCTTCACTCCTCAAGCTCAAG CCCAACAGCTCCAGAAGAAGCACTCCCGATCCGTCTCAGATCTGAGCGATCEST: gi|86072123|gb|DR367880.1|DR367880
genomic: CAACTGCGGTACTAGAGACGAGGCTGCCGTCTTCACTCCTCAAGCTCAAGgtttctcttt ... cacctcgcagCCCAACAGCTCCAGAAGAAGCACTCCCGATCCGTCTCAGATCTGAGCGATC
EST: CAACTGCGGTACTAGAGACGAGGCTGCCGTCTTCACTCCTCAAGCTCAAG CCCAACAGCTCCAGAAGAAGCACTCCCGATCCGTCTCAGATCTGAGCGATCEST: gi|116447998|gb|EG490590.1|EG490590
genomic: CAACTGCGGTACTAGAGACGAGGCTGCCGTCTTCACTCCTCAAGCTCAAGgtttctcttt ... cacctcgcagCCCAACAGCTCCAGAAGAAGCACTCCCGATCCGTCTCAGATCTGAGCGATC
EST: CAACTGCGGTACTAGAGACGAGGCTGCCGTCTTCACTCCTCAAGCTCAAG CCCAACAGCTCCAGAAGAAGCACTCCCGATCCGTCTCAGATCTGAGCGATCEST: gi|116447999|gb|EG490591.1|EG490591
genomic: CAACTGCGGTACTAGAGACGAGGCTGCCGTCTTCACTCCTCAAGCTCAAGgtttctcttt ... cacctcgcagCCCAACAGCTCCAGAAGAAGCACTCCCGATCCGTCTCAGATCTGAGCGATC
EST: CAACTGCGGTACTAGAGACGAGGCTGCCGTCTTCACTCCTCAAGCTCAAG CCCAACAGCTCCAGAAGAAGCACTCCCGATCCGTCTCAGATCTGAGCGATC
genomic: CAACTGCGGTACTAGAGACGAGGCTGCCGTCTTCACTCCTCAAGCTCAAGgtttctcttt ... cacctcgcagCCCAACAGCTCCAGAAGAAGCACTCCCGATCCGTCTCAGATCTGAGCGATC
tgtctctcgccgtttcttttttcctgatctctctcctctttggttcacctcgcagCCCAACAGCTCCAGAAGAAGCACTCCCGATCCGTCTCAGATCTGAGCGATCCATCCACTCCTCGCTTCCGAGACGACTCTCGCACTCCTATTTCGTATGC
tcctgat putative branch site (score: 3)
tttcttttttcctgat CT-rich tract
tttctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttctctttctctctatctctgtctctcgccgtttcttttttcctgatctctctcctctttggttcacctcgcagCCCAACAGCTCCAGAAGAAGCACTCCCGATCCGTCTCAGATCTGAGCGATCCATCCACTCCTCGCTTCCGAGACGACTCTCGCACTCCTATTTCGTATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC