Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agctcggagatcgatcgatttttgctttatattcatcgctttgttttatattccttccacgattgtttttgctgatgtgtatgattttgtttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACCTTCAAGGACGAGAAAGCCATGAGGGATGCGATTGAAGAGATGAACGGTA

Basic information

species Arabidopsis thaliana
transcript AT4G39260.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86051973|gb|DR347730.1|DR347730
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86051921|gb|DR347678.1|DR347678
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86051983|gb|DR347740.1|DR347740
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|301501197|gb|HO206737.1|HO206737
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86051937|gb|DR347694.1|DR347694
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|116471776|gb|EG514368.1|EG514368
EST:     TTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: TTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86081637|gb|DR377394.1|DR377394
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86051912|gb|DR347669.1|DR347669
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86051923|gb|DR347680.1|DR347680
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86051988|gb|DR347745.1|DR347745
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86051996|gb|DR347753.1|DR347753
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTNTCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86051949|gb|DR347706.1|DR347706
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86051991|gb|DR347748.1|DR347748
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86051946|gb|DR347703.1|DR347703
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|47830248|gb|CK119932.1|CK119932
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86051933|gb|DR347690.1|DR347690
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGAATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86076354|gb|DR372111.1|DR372111
EST:     TTATCGATTCTAAG                         ATCATTAACGACCGCKAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: TTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86051978|gb|DR347735.1|DR347735
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTNTCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86051952|gb|DR347709.1|DR347709
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86051977|gb|DR347734.1|DR347734
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86063288|gb|DR359045.1|DR359045
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTGTCGATTCTRAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86051939|gb|DR347696.1|DR347696
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86063283|gb|DR359040.1|DR359040
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86051938|gb|DR347695.1|DR347695
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|47830670|gb|CK120354.1|CK120354
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86051985|gb|DR347742.1|DR347742
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86063295|gb|DR359052.1|DR359052
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTGTCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86081483|gb|DR377240.1|DR377240
EST:     TCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: TCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86063287|gb|DR359044.1|DR359044
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTNTCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86063290|gb|DR359047.1|DR359047
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86063286|gb|DR359043.1|DR359043
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86051953|gb|DR347710.1|DR347710
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86051924|gb|DR347681.1|DR347681
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86051997|gb|DR347754.1|DR347754
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|47832024|gb|CK121708.1|CK121708
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86076477|gb|DR372234.1|DR372234
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|47830154|gb|CK119838.1|CK119838
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86051950|gb|DR347707.1|DR347707
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTNTCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86051968|gb|DR347725.1|DR347725
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86051963|gb|DR347720.1|DR347720
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86051980|gb|DR347737.1|DR347737
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86081434|gb|DR377191.1|DR377191
EST:     AAGATCTCCAAAGKACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCKAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86051930|gb|DR347687.1|DR347687
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86051970|gb|DR347727.1|DR347727
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86051928|gb|DR347685.1|DR347685
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTNTCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86079211|gb|DR374968.1|DR374968
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86051971|gb|DR347728.1|DR347728
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86082275|gb|DR378034.1|DR378034
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTAYCGATTCTAAG                         ATCATTAACGACCGCKAGASTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86051935|gb|DR347692.1|DR347692
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGMCGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86051926|gb|DR347683.1|DR347683
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86051962|gb|DR347719.1|DR347719
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86051920|gb|DR347677.1|DR347677
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86051994|gb|DR347751.1|DR347751
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86051916|gb|DR347673.1|DR347673
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86051989|gb|DR347746.1|DR347746
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86063296|gb|DR359053.1|DR359053
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86051981|gb|DR347738.1|DR347738
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|86063285|gb|DR359042.1|DR359042
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
EST: gi|47830081|gb|CK119765.1|CK119765
EST:     AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAG                         ATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC
genomic: AAGATCTTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGgtctgttaca ... ttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatattccttccacgattgtttttgctgatgtgtatgattttgtttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACCTTCAAGGACGAGAAAGCCATGAGGGATGCGATTGAAGAGATGAACGGTA
                        tgctgat  putative branch site (score: 3)
                                       ttttgttt  putative PPT
                                      attttgtttgttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agctcggagatcgatcgatttttgctttatattcatcgctttgttttatattccttccacgattgtttttgctgatgtgtatgattttgtttgtttacagATCATTAACGACCGCGAGAGTGGAAGATCAAGGGGATTCGGATTCGTCACCTTCAAGGACGAGAAAGCCATGAGGGATGCGATTGAAGAGATGAACGGTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG