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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtctgacttgttcatcctcaatttgaaattcgtggatattgaaagtgaatcgttcgatgttgttttgtggttaaaaagAGGGAGATGCTGTGTTGATGCGGTCGTCGGAGCCTGGAAAACCGTCGTACGTAGCGAGGGTAGAGGCGATCGAGACGGACGCGCGTGGATCGCACGCGAA

Basic information

species Arabidopsis thaliana
transcript AT4G39100.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124832632|gb|EH917071.1|EH917071
EST:     GAAGCAGCTCAAGTCCTATAAACTCAAACACATCAACAAGAGTATTCAAG                         AGGGAGATGCTGTGTTGATGC
genomic: GAAGCAGCTCAAGTCCTATAAACTCAAACACATCAACAAGAGTATTCAAGgtacgtctga ... ggttaaaaagAGGGAGATGCTGTGTTGATGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaaattcgtggatattgaaagtgaatcgttcgatgttgttttgtggttaaaaagAGGGAGATGCTGTGTTGATGCGGTCGTCGGAGCCTGGAAAACCGTCGTACGTAGCGAGGGTAGAGGCGATCGAGACGGACGCGCGTGGATCGCACGCGAA
            atattgaaa  TA-rich tract