Sequence
atgc intronic sequence ATGC exonic sequence...ctagttaaaatcttggtatcatctacgtgcatgtgaagtgtgaacacacatcaagaacaatctaaactttatttaagatgtttctgcttttggtcagtagGAGAAGTGAAGCAGCCGAAGCGGAGGAGGAAGAAGACCAAAGGATCCGTGGCTTCCGCAGATGGAGGCAACGGTTTGTTTAGAAAGAGGAAGCTGACCGA
Basic information
species | Arabidopsis thaliana |
transcript | AT4G36740.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86059585|gb|DR355342.1|DR355342EST: TTTTATCTCTCAACTGTACCCTGATGTCTACACTCAGATAGTACAACCAG GAGAAGTGAAGCAGCCGAAGCGGAGGAGGAAGAAGACCAAAGGATCCGTGG
genomic: TTTTATCTCTCAACTGTACCCTGATGTCTACACTCAGATAGTACAACCAGgtttgtcctt ... tggtcagtagGAGAAGTGAAGCAGCCGAAGCGGAGGAGGAAGAAGACCAAAGGATCCGTGG
EST:
gi|86059584|gb|DR355341.1|DR355341EST: TTTTATCTCTCAACTGTACCCTGATGTCTACACTCAGATAGTACAACCAG GAGAAGTGAAGCAGCCGAAGCGGAGGAGGAAGAAGACCAAAGGATCCGTGG
genomic: TTTTATCTCTCAACTGTACCCTGATGTCTACACTCAGATAGTACAACCAGgtttgtcctt ... tggtcagtagGAGAAGTGAAGCAGCCGAAGCGGAGGAGGAAGAAGACCAAAGGATCCGTGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acacatcaagaacaatctaaactttatttaagatgtttctgcttttggtcagtagGAGAAGTGAAGCAGCCGAAGCGGAGGAGGAAGAAGACCAAAGGATCCGTGGCTTCCGCAGATGGAGGCAACGGTTTGTTTAGAAAGAGGAAGCTGACCGA
atctaaa putative branch site (score: 3)
tttctgctttt putative PPT
aacaatctaaacttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctagttaaaatcttggtatcatctacgtgcatgtgaagtgtgaacacacatcaagaacaatctaaactttatttaagatgtttctgcttttggtcagtagGAGAAGTGAAGCAGCCGAAGCGGAGGAGGAAGAAGACCAAAGGATCCGTGGCTTCCGCAGATGGAGGCAACGGTTTGTTTAGAAAGAGGAAGCTGACCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - -acacaca
- - - - - - - - - - - - - - - - - - - - - - - - - -caagaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaaact