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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggttaattgtttctttaactaaatataacagtacctttttggttataattccattgttgtctttggtttgatcatctctctcttgttcttactatgttagGGTCTGACCAAAATCGCCACGAACCGGTTGCAGAAAGAGTTCATGGAGTGGCAAACCAATCCTCCTTCTGGTTTCAAGCACAGAGTCTCTGATAATCTCC

Basic information

species Arabidopsis thaliana
transcript AT4G36410.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86046991|gb|DR342746.1|DR342746
EST:     ACTCACTGTAATAAACACAAATGACGAGTTCTTCTGAATCAACTCGCAAG                         GGTCTGACCAAAATCGCCACGAACCGGTTGCAGAAAGAGTTCATGGAGTGG
genomic: ACTCACTGTAATAAACACAAATGACGAGTTCTTCTGAATCAACTCGCAAGgttggttaat ... actatgttagGGTCTGACCAAAATCGCCACGAACCGGTTGCAGAAAGAGTTCATGGAGTGG
EST: gi|86046992|gb|DR342747.1|DR342747
EST:     ACTCACTGTAATAAACACAAATGACGAGTTCTTCTGAATCAACTCGCAAG                         GGTCTGACCAAAATCGCCACGAACCGGTTGCAGAAAGAGTTCATGGAGTGG
genomic: ACTCACTGTAATAAACACAAATGACGAGTTCTTCTGAATCAACTCGCAAGgttggttaat ... actatgttagGGTCTGACCAAAATCGCCACGAACCGGTTGCAGAAAGAGTTCATGGAGTGG
EST: gi|86046994|gb|DR342749.1|DR342749
EST:     GAGTTCTTCTGAATCAACTCGCAAG                         GGTCTGACCAAAATCGCCACGAACCGGTTGCAGAAAGAGTTCATGGAGTGG
genomic: GAGTTCTTCTGAATCAACTCGCAAGgttggttaat ... actatgttagGGTCTGACCAAAATCGCCACGAACCGGTTGCAGAAAGAGTTCATGGAGTGG
EST: gi|86046995|gb|DR342750.1|DR342750
EST:     ACTCACTGTAATAAACACAAATGACGAGTTCTTCTGAATCAACTCGCAAG                         GGTCTGACCAAAATCGCCACGAACCGGTTGCAGAAAGAGTTCATGGAGTGG
genomic: ACTCACTGTAATAAACACAAATGACGAGTTCTTCTGAATCAACTCGCAAGgttggttaat ... actatgttagGGTCTGACCAAAATCGCCACGAACCGGTTGCAGAAAGAGTTCATGGAGTGG
EST: gi|86081006|gb|DR376763.1|DR376763
EST:     ACTCACTGTAATAAACACAAATGACGAGTTCTTCTGAATCAACTCGCAAG                         GGTCTGACCAAAATCGCCACGAACCGGTTGCAGAAAGAGTTCATGGAGTGG
genomic: ACTCACTGTAATAAACACAAATGACGAGTTCTTCTGAATCAACTCGCAAGgttggttaat ... actatgttagGGTCTGACCAAAATCGCCACGAACCGGTTGCAGAAAGAGTTCATGGAGTGG
EST: gi|86046993|gb|DR342748.1|DR342748
EST:     ACTCACTGTAATAAACACAAATGACGAGTTCTTCTGAATCAACTCGCAAG                         GGTCTGACCAAAATCGCCACGAACCGGTTGCAGAAAGAGTTCATGGAGTGG
genomic: ACTCACTGTAATAAACACAAATGACGAGTTCTTCTGAATCAACTCGCAAGgttggttaat ... actatgttagGGTCTGACCAAAATCGCCACGAACCGGTTGCAGAAAGAGTTCATGGAGTGG
EST: gi|86046996|gb|DR342751.1|DR342751
EST:     ACTCACTGTAATAAACACAAATGACGAGTTCTTCTGAATCAACTCGCAAG                         GGTCTGACCAAAATCGCCACGAACCGGTTGCAGAAAGAGTTCATGGAGTGG
genomic: ACTCACTGTAATAAACACAAATGACGAGTTCTTCTGAATCAACTCGCAAGgttggttaat ... actatgttagGGTCTGACCAAAATCGCCACGAACCGGTTGCAGAAAGAGTTCATGGAGTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattccattgttgtctttggtttgatcatctctctcttgttcttactatgttagGGTCTGACCAAAATCGCCACGAACCGGTTGCAGAAAGAGTTCATGGAGTGGCAAACCAATCCTCCTTCTGGTTTCAAGCACAGAGTCTCTGATAATCTCC
                                        ttcttac  putative branch site (score: 2)
                          tcatctctctcttgtt  CT-rich tract
                                           ttactat  TA-rich tract