1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gttctttcttcgaatctctctctcactcacgctccacaattatgggttttggagtacttattaatgagatgaaatttgacagGTATGGTTGAGCATGCTCGTGTTCATCCAAAGTTTCTTCACTCGAATGCTACTTCACATAAATGGGCTTTTGGAG
species | Arabidopsis thaliana |
transcript | AT4G36290.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCCGGCGAAAACTTTGTGATCCCTTCAAGTGTTACTCTAACTGCCATAG GTATGGTTGAGCATGCTCGTGTTCATCCAAAGTTTCTTCACTCGAATGCTAEST: gi|86069499|gb|DR365256.1|DR365256
genomic: AGCCGGCGAAAACTTTGTGATCCCTTCAAGTGTTACTCTAACTGCCATAGgttctttctt ... aatttgacagGTATGGTTGAGCATGCTCGTGTTCATCCAAAGTTTCTTCACTCGAATGCTA
EST: AGCCGGCGAAAACTTTGTGATCCCTTCAAGTGTTACTCTAACTGCCATAG GTATGGTTGAGCATGCTCGTGTTCATCCAAAGTTTTCTTCACTCGAATGCTEST: gi|86069500|gb|DR365257.1|DR365257
genomic: AGCCGGCGAAAACTTTGTGATCCCTTCAAGTGTTACTCTAACTGCCATAGgttctttctt ... aatttgacagGTATGGTTGAGCATGCTCGTGTTCATCCAAAGTTT-CTTCACTCGAATGCT
EST: AGCCGGCGAAAACTTTGTGATCCCTTCAAGTGTTACTCTAACTGCCATAG GTATGGTTGAGCATGCTCGTGTTCATCCAAAGTTTCTTCACTCGAATGCTAEST: gi|86069501|gb|DR365258.1|DR365258
genomic: AGCCGGCGAAAACTTTGTGATCCCTTCAAGTGTTACTCTAACTGCCATAGgttctttctt ... aatttgacagGTATGGTTGAGCATGCTCGTGTTCATCCAAAGTTTCTTCACTCGAATGCTA
EST: AGCCGGCGAAAACTTTGTGATCCCTTCAAGTGTTACTCTAACTGCCATAG GTATGGTTGAGCATGCTCGTGTTCATCCAAAGTTTCTTCACTCGAATGATA
genomic: AGCCGGCGAAAACTTTGTGATCCCTTCAAGTGTTACTCTAACTGCCATAGgttctttctt ... aatttgacagGTATGGTTGAGCATGCTCGTGTTCATCCAAAGTTTCTTCACTCGAATGCTA
cacgctccacaattatgggttttggagtacttattaatgagatgaaatttgacagGTATGGTTGAGCATGCTCGTGTTCATCCAAAGTTTCTTCACTCGAATGCTACTTCACATAAATGGGCTTTTGGAG
tattaat putative branch site (score: 2)
tacttattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctttcttcgaatctctctctcactcacgctccacaattatgggttttggagtacttattaatgagatgaaatttgacagGTATGGTTGAGCATGCTCGTGTTCATCCAAAGTTTCTTCACTCGAATGCTACTTCACATAAATGGGCTTTTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG