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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcaatcttcccaatttcgtttcttcttcgattttagtttctgtttctctttcgttattgaaattcaaaattcgctgcaaaatcctagttaccagttccagctgtttctaattttatttcagGATCATCGCAAATTCAGACAGAGATACTATGAATATCTTGACCATTTACGAGTTCCTGACGGACCTATCTTTCTCATGATTTGCGGCGAAGGACCTTGCA

Basic information

species Arabidopsis thaliana
transcript AT4G36190.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124932627|gb|EL009867.1|EL009867
EST:     CTACTCTCCATCT                         GATCATCGCAAATTCAGACAGAGATACTATGAATATCTTGACCATTTACGA
genomic: CTACTCTCCATCTgtaatcaatc ... tttatttcagGATCATCGCAAATTCAGACAGAGATACTATGAATATCTTGACCATTTACGA
EST: gi|19877064|gb|AU237895.1|AU237895
EST:     CGAGGGATGAGCTCTGGTTCACTCAAACCTTAGATCACTACTCTCCATCT                         GATCATCGCAAATTCAGACAGAGATACTATGAATATCTTGACCATTTACGA
genomic: CGAGGGATGAGCTCTGGTTCACTCAAACCTTAGATCACTACTCTCCATCTgtaatcaatc ... tttatttcagGATCATCGCAAATTCAGACAGAGATACTATGAATATCTTGACCATTTACGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaattcgctgcaaaatcctagttaccagttccagctgtttctaattttatttcagGATCATCGCAAATTCAGACAGAGATACTATGAATATCTTGACCATTTACGAGTTCCTGACGGACCTATCTTTCTCATGATTTGCGGCGAAGGACCTTGCA
                                      ttctaat  putative branch site (score: 2)
                                            ttttatttc  CT-rich tract
                                   tgtttctaattttatt  TA-rich tract