Sequence
atgc intronic sequence ATGC exonic sequencegtaagtcgtaatttttctcttttactccggagaaaattagaatgattgttttagaattctctgttttgtgattgatgagattagGAAGGGATTGCTTTTGCTTGATGCCAACGGGAGGAGGAAAATCGATTTGTTATCAGATACCTGCATTAGCTAAACCTGGAATCGTCCTTGTTGTGTCTCC
Basic information
species | Arabidopsis thaliana |
transcript | AT4G35740.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G35740.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: LOC_Os02g54020.1 (Oryza sativa), 3'ss of exon 2
------------------------------------------------------------------gtaagtcgtaatttttctcttttactccggagaaaattagaatgattgttttagaattctctgttttgtgattg----atgagatt-------agGAAGGGATTGCTTTTGCTTGATGCCAACGGGAGGAGGAAAATCGATTTGTTATCAGATACCTGCATTAGCTAAACCTGGAATCGTCCTTGTTGTGTCTCC
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gtgctcttcccgtctgtgtttgtgcttgtagtctttatttctttttagttttgctgaatatttctggtcaaaagaacttttgttgctgatcactgaagtatgctgtctgaaacttttgtgcaccatggattctattaatgtaacaagcaatttatttctagGAAGGGATTGCTTTTGTTTGATGCCAACTGGAGGTGGAAAATCAATGTGCTATCAGATTCCTGCTCTAGTGAAGTCAGGCATTGTTCTTGTTATCTCACC
upper sequence: AT4G35740.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA09G08180.1 (Glycine max), 3'ss of exon 1
--------gtaagtcgtaattttt-ctcttttactccggagaaaattagaat-gattgttttag-aatt----ctctgttttgtgattgatgagat-tagGAAGGGATTGCTTTTGCTTGATGCCAACGGGAGGAGGAAAATCGATTTGTTATCAGATACCTGCATTAGCTAAACCTGGAATCGTCCTTGTTGTGTCTCC
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cagtttggtttgtttgtttttttcacacccctagcatgtggtaatttaagtttgatttttccattgattgtggctctttatttttattttttggctgcagGGAAAGATTGTTTTTGTCTTATGCCAACTGGAGGAGGCAAGTCGATGTGTTATCAGATCCCTGCATTGGCAAAAGCAGGCATTGTGCTTGTCGTTTGCCC
upper sequence: AT4G35740.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv11s0016g00850.t01 (Vitis vinifera), 3'ss of exon 1
--------------gta-agtcgtaatttttctcttttactccggagaaaattagaatgattgttttagaattctctgttttgtg---attgatgagattagGAAGGGATTGCTTTTGCTTGATGCCAACGGGAGGAGGAAAATCGATTTGTTATCAGATACCTGCATTAGCTAAACCTGGAATCGTCCTTGTTGTGTCTCC
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cagtcagaaagagtgtagagttatgttggcgatcctttg-tatggaatttttttaaacagt-gatttgggttctgttgattagtgctaattttcttgtgcagGAAGAGATTGTTTTTGTCTCATGCCAACAGGAGGAGGAAAGTCAATGTGTTATCAGATTCCTGCACTGGCAAAACCAGGGATTGTGCTCGTGGTTTGTCCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19876818|gb|AU237649.1|AU237649EST: TGCAGATTTCAGAGGGAAGCAATTGGAGGCTATTCAAGCTGTTGTATCTG GAAGGGATTGCTTTTGCTTGATGCCAACGGGAGGAGGAAAATCGATTTGTT
genomic: TGCAGATTTCAGAGGGAAGCAATTGGAGGCTATTCAAGCTGTTGTATCTGgtaagtcgta ... atgagattagGAAGGGATTGCTTTTGCTTGATGCCAACGGGAGGAGGAAAATCGATTTGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gagaaaattagaatgattgttttagaattctctgttttgtgattgatgagattagGAAGGGATTGCTTTTGCTTGATGCCAACGGGAGGAGGAAAATCGATTTGTTATCAGATACCTGCATTAGCTAAACCTGGAATCGTCCTTGTTGTGTCTCC
gattgat putative branch site (score: 4)
attgttttagaatt TA-rich tract