Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatctctcttcgcatctctatattccttgcttgtttctccagtctctgtattggaatctctcatttgatcatagcttcgagtatatcatgttctgatttaaggtttttgtttgatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC

Basic information

species Arabidopsis thaliana
transcript AT4G34670.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G34670.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv05s0020g03900.t01 (Vitis vinifera), 3'ss of exon 1
gtaaatctctcttcgcatctctatattccttgcttgtttctccagtctctgtattggaatctctcatttgatcatagcttcgagtatatcatgttctgatttaaggtttttgtttgatcat-atagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
                                               |     |  || || ||| | ||   ||   || | || |   ||   || || |   || |   ||  |  || | |||||||||||||||||||| ||||| |  || ||||| |||||||||||
----------------------------------------------gtactcctctgactcgctcttctgtcaatgcatttgtgtttgg-atacactcatgt---gtctgatttgaactatgacagGAAGAACAAGAGGATTTCCAAGGGAAAAAAGGGAGGCAAGAAGAAGGC

upper sequence: AT4G34670.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv14s0030g01810.t01 (Vitis vinifera), 3'ss of exon 1
gtaaatctctcttcgcatctctatattccttgcttgtttctccagtctctgtattggaatctctcatttgatcatagcttcgagtatatcatgttctgatttaaggtttttgtttgatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
                         | | || ||   |  | |  ||||  |    |  ||     |||   ||    |||    || ||| |||          |||| | | |||   |  ||||| |||||||||||||| ||||| |  || |||||||||||||||||
------------------------gtccgttcctctctcttgccttctccctccaagcttcctctctttacccacgttttctg--atctcacgttt---------gtttgtttatgacttttcagGAAAAACAAGAGGATTTCCAAGGGGAAAAAGGGAGGAAAGAAGAAGGC

upper sequence: AT4G34670.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: EFJ11647 (Selaginella moellendorffii), 3'ss of exon 1
gtaaatctctcttcgcatctctatattccttgcttgtttctccagtctctgtattggaatctctcatttgatcatagcttcgagtatatcatgttctgatttaaggtttttgtttgatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
                                                                 |  ||  | | | |||| |||      | | |   | ||  |   |||||  |     |||||||||||| ||||||| ||||| | ||||||||| ||||||||   
---------------------------------------------------------------gtacgtgcgc-tcgtttcgtgta------gctttagctcaa--tcagtgtttccttg-gcagGAAGAACAAGCGGATTTCCAAGGGAAAGAAAGGAGGCAAGAAGAAAAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86054275|gb|DR350032.1|DR350032
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054239|gb|DR349996.1|DR349996
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCTG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054283|gb|DR350040.1|DR350040
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCTG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054294|gb|DR350051.1|DR350051
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054257|gb|DR350014.1|DR350014
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054264|gb|DR350021.1|DR350021
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054274|gb|DR350031.1|DR350031
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACGRGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054293|gb|DR350050.1|DR350050
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054267|gb|DR350024.1|DR350024
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054247|gb|DR350004.1|DR350004
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054252|gb|DR350009.1|DR350009
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054250|gb|DR350007.1|DR350007
EST:     AGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTRGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: AGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCT-GTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054270|gb|DR350027.1|DR350027
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCTG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054281|gb|DR350038.1|DR350038
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054284|gb|DR350041.1|DR350041
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCTG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054242|gb|DR349999.1|DR349999
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054292|gb|DR350049.1|DR350049
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054272|gb|DR350029.1|DR350029
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054276|gb|DR350033.1|DR350033
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054277|gb|DR350034.1|DR350034
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054289|gb|DR350046.1|DR350046
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054249|gb|DR350006.1|DR350006
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCTG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054259|gb|DR350016.1|DR350016
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054233|gb|DR349990.1|DR349990
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054296|gb|DR350053.1|DR350053
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054240|gb|DR349997.1|DR349997
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054254|gb|DR350011.1|DR350011
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054285|gb|DR350042.1|DR350042
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054280|gb|DR350037.1|DR350037
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054241|gb|DR349998.1|DR349998
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACRGGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054263|gb|DR350020.1|DR350020
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054256|gb|DR350013.1|DR350013
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054282|gb|DR350039.1|DR350039
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054271|gb|DR350028.1|DR350028
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054258|gb|DR350015.1|DR350015
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054287|gb|DR350044.1|DR350044
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACRRGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054253|gb|DR350010.1|DR350010
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054295|gb|DR350052.1|DR350052
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054279|gb|DR350036.1|DR350036
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054236|gb|DR349993.1|DR349993
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054297|gb|DR350054.1|DR350054
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCTG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054288|gb|DR350045.1|DR350045
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCTG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054251|gb|DR350008.1|DR350008
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAASGGGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054248|gb|DR350005.1|DR350005
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054266|gb|DR350023.1|DR350023
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054291|gb|DR350048.1|DR350048
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAAACAAGAGGATTTCAAAGGGTAGGAAAGGAGG
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAA-CAAGAGGATTTCAAAGGGTAGGAAAGGAGG
EST: gi|125199691|gb|EL214645.1|EL214645
EST:     TAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGA-TTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054278|gb|DR350035.1|DR350035
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGRGSSAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054290|gb|DR350047.1|DR350047
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCTG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|164215138|gb|ES063419.1|ES063419
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAA
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAA
EST: gi|86054243|gb|DR350000.1|DR350000
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054238|gb|DR349995.1|DR349995
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054269|gb|DR350026.1|DR350026
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054246|gb|DR350003.1|DR350003
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054273|gb|DR350030.1|DR350030
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCTG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054265|gb|DR350022.1|DR350022
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054268|gb|DR350025.1|DR350025
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054235|gb|DR349992.1|DR349992
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCTG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054261|gb|DR350018.1|DR350018
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054244|gb|DR350001.1|DR350001
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054260|gb|DR350017.1|DR350017
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054237|gb|DR349994.1|DR349994
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|164105414|gb|ES180028.1|ES180028
EST:     GACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: GACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054262|gb|DR350019.1|DR350019
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054234|gb|DR349991.1|DR349991
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
EST: gi|86054286|gb|DR350043.1|DR350043
EST:     TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG                         GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
genomic: TAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGGgtaaatctct ... gatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcatagcttcgagtatatcatgttctgatttaaggtttttgtttgatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC
                                    tttttgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaatctctcttcgcatctctatattccttgcttgtttctccagtctctgtattggaatctctcatttgatcatagcttcgagtatatcatgttctgatttaaggtttttgtttgatcatatagGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG