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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttttttttttttctatatatagctatgttacatttttagttacagcaatatttcaaacattttctttgtttttattagGTGTGTGTGTTCTACTTGATTCTCCGAGCTCTTGATACTGTTG

Basic information

species Arabidopsis thaliana
transcript AT4G34650.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125051389|gb|EL123658.1|EL123658
EST:     AAAGCTTTTCTCTTGTTATTCAACAACTTGGCACCGAGCTTCGTAACGCC                         GTGTGTGTGTT
genomic: AAAGCTTTTCTCTTGTTATTCAACAACTTGGCACCGAGCTTCGTAACGCCgtatgttttt ... tttttattagGTGTGTGTGTT
EST: gi|86047504|gb|DR343259.1|DR343259
EST:     AAAGCTTTTCTCTTGTTATTCAACAACTTGGCACCGAGCTTCGTAACGCC                         GTGTGTGTGTTCTACTTGATTCTCCGAGCTCTTGATACTGTTG
genomic: AAAGCTTTTCTCTTGTTATTCAACAACTTGGCACCGAGCTTCGTAACGCCgtatgttttt ... tttttattagGTGTGTGTGTTCTACTTGATTCTCCGAGCTCTTGATACTGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgttacatttttagttacagcaatatttcaaacattttctttgtttttattagGTGTGTGTGTTCTACTTGATTCTCCGAGCTCTTGATACTGTTG
                                    ttttctttgtttttat  CT-rich tract
                       aatatttcaaacattt  TA-rich tract