1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tataaaatggtgtgtgtgttcgatcacatgctatcagtgtagctgtgttcagtcttgcagcattttcttattcaatttttttttttttttcattttgtagGTGTGTGTGTTCTACTTGGTTCTCCGAGCTCTTGATACTGTTG
species | Arabidopsis thaliana |
transcript | AT4G34640.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCAACTCAACACCGAGCTCCGTAACGCC GTGTGTGTGTTCTACTTGGTTCTCCGAGCTCTTGATACTGTTGEST: gi|124931913|gb|EL009226.1|EL009226
genomic: AGCAACTCAACACCGAGCTCCGTAACGCCgtaagttctt ... cattttgtagGTGTGTGTGTTCTACTTGGTTCTCCGAGCTCTTGATACTGTTG
EST: GCTTTTCTCTCGTTATTCAGCAACTCAACACCGAGCTCCGTAACGCC GTGTGTGTGTTCTACTTGGTTCTCCGAGCTCTTGATACTGTTGAGGAEST: gi|124957437|gb|EL032273.1|EL032273
genomic: GCTTTTCTCTCGTTATTCAGCAACTCAACACCGAGCTCCGTAACGCCgtaagttctt ... cattttgtagGTGTGTGTGTTCTACTTGGTTCTCCGAGCTCTTGATACTGTTGAGGA
EST: CACCGAGCTCCGTAACGCC GTGTGTGTGTTCTACTTGGTTCTCCGAGCTCTTGATACTGTTGEST: gi|124848926|gb|EH933363.1|EH933363
genomic: CACCGAGCTCCGTAACGCCgtaagttctt ... cattttgtagGTGTGTGTGTTCTACTTGGTTCTCCGAGCTCTTGATACTGTTG
EST: TATTCAGCAACTCAACACCGAGCTCCGTAACGCC GTGTGTGTGTTCTACTTGGTTCTCCGAGCTCTTGATA
genomic: TATTCAGCAACTCAACACCGAGCTCCGTAACGCCgtaagttctt ... cattttgtagGTGTGTGTGTTCTACTTGGTTCTCCGAGCTCTTGATA
tgttcagtcttgcagcattttcttattcaatttttttttttttttcattttgtagGTGTGTGTGTTCTACTTGGTTCTCCGAGCTCTTGATACTGTTG
cattttcttattcaat CT-rich tract
attttcttattcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tataaaatggtgtgtgtgttcgatcacatgctatcagtgtagctgtgttcagtcttgcagcattttcttattcaatttttttttttttttcattttgtagGTGTGTGTGTTCTACTTGGTTCTCCGAGCTCTTGATACTGTTG
-ataaaat
- - - - - - - - - - - - cacatgc