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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gctttatgacttatgttgtatagtgttgttttaaaggctctaggtgtttcttttgttatggaacgtggtattaatggtgggactttttgtatttgtacagATAGATGAAAATGTAAAAAGGGAGATAATCAACCACAGGTCCTTAAGACATCCCAATATCGTTAGATTCAAAGAG

Basic information

species Arabidopsis thaliana
transcript AT4G33950.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G33950.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv03s0063g01080.t01 (Vitis vinifera), 3'ss of exon 1
---gctttatgacttatgttgtatagtgttgttttaaaggctctaggtgtttcttttgttatggaacgtggtattaatggtgggactttttgtatttgtacagATAGATGAAAATGTAAAAAGGGAGATAATCAACCACAGGTCCTTAAGACATCCCAATATCGTTAGATTCAAAGAG
    ||| |  ||||||     || || |  ||        | |||||| | | ||| |  |   | || || ||     |     |   | | |||  ||||||||||||||||||| ||||||| || || |||||||| ||  | || |||||||| ||||| ||||||||||||
ggaacttgactacttataagacat-gtataattggggcctttttaggtggtgccttt-tagtttgatgttgtgttttaccttattttacatttgttta-acagATAGATGAAAATGTACAAAGGGAAATCATTAACCACAGATCACTGAGGCATCCCAACATCGTCAGATTCAAAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttcttttgttatggaacgtggtattaatggtgggactttttgtatttgtacagATAGATGAAAATGTAAAAAGGGAGATAATCAACCACAGGTCCTTAAGACATCCCAATATCGTTAGATTCAAAGAG
                       tattaat  putative branch site (score: 2)
                                      tttttgtatttgta  TA-rich tract