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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttttattcccttccttgctttatttgatactctattgctcttccaagtttgtattaatgtatgaaatgcaacatctttgtagGCTGAGACGAATAGATTAGTTGGAGAGAACAAAGGTGTAGCAGATACACAGATTCGTCTTAAAATTTCTTCACCTAATGTATTGAACATCACGCTTGTGG

Basic information

species Arabidopsis thaliana
transcript AT4G33650.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G33650.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: PP1S221_85V6.1 (Physcomitrella patens), 3'ss of exon 3
----------------------------------------------------------------------------------------------gttttttattcccttcct--tgctttatttgatactctattgctcttccaagt-ttgtattaatgtatgaaatgcaacatc--tttgtagGCTGAGACGAATAGATTAGTTGGAGAGAACAAAGGTGTAGCAGATACACAGATTCGTCTTAAAATTTCTTCACCTAATGTATTGAACATCACGCTTGTGG
                                                                                                 | ||||||   ||    |     | |||       |       |  || |  | |||||||  ||    |    | |   |||| ||||||||||  | ||     |||||   ||||| ||| |  | || |  |||||||| || ||||||| ||| || ||||| |||||||||||||||||||
gtgatttttttttttttttttttttttttttttttttttttttccttctatgtcgcactctttgggatttattttcaagcacttacagtctgcgcagtattattcatgtcaaaataaaccacttgtcgtcgcagactatatgaaaatgctatattaattcattgtttatctccttggtttgcagGCTGAGACCGACAGGGAGCTTGGAACCAACAAGGGTATTTCTGAGAAGCAGATTCGCCTGAAAATTTTTTCCCCCAATGTTTTGAACATCACGCTTGTGG

upper sequence: AT4G33650.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: PP1S49_216V6.1 (Physcomitrella patens), 3'ss of exon 3
---gttttttattccc---ttccttgctttatttgatactctattgctcttccaagtttgtattaatgta-----tgaaatgcaacatct----ttgtagGCTGAGACGAATAGATTAGTTGGAGAGAACAAAGGTGTAGCAGATACACAGATTCGTCTTAAAATTTCTTCACCTAATGTATTGAACATCACGCTTGTGG
   | || || | | |   ||  | | | |    || | |  | |    ||  |  |   | ||   |||     |||  ||| || |||    ||| ||||||| ||  | ||     |||||  |||||| ||  |  | || |  |||||||| || ||||||| |||||||||||| |||||||| ||||||||||
gttgcttcttttgcacgaattattcgttgtcaaagacaattgagtatcgttggagttcattcttggcgtactaaatgaggtgccacttctcgggttgcagGCTGAAACTGACAGGGAGCTTGGAACGAACAAGGGGATTTCTGAAAAGCAGATTCGACTGAAAATTTTTTCACCTAATGTTTTGAACATTACGCTTGTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactctattgctcttccaagtttgtattaatgtatgaaatgcaacatctttgtagGCTGAGACGAATAGATTAGTTGGAGAGAACAAAGGTGTAGCAGATACACAGATTCGTCTTAAAATTTCTTCACCTAATGTATTGAACATCACGCTTGTGG
                        tattaat  putative branch site (score: 2)
                                            catcttt  putative PPT
                        tattaatgtatgaaat  TA-rich tract