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gtaggttcttctctctctttctatatgattttggattcactccagtagtgtaatgttactaacatggatgttctgctctattgaagGGGATGACATGTGGAGGGTGTTCAGCAAGTGTGAAGAAGATACTGGAAAGCCAA
species | Arabidopsis thaliana |
transcript | AT4G33520.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTGATGGTGTCTCTGTTCCGTCGTCAGATATCATTATTCTCGATGTTGGA GGGATGACATGTGGAGGGTGNTCAGCAAGTGTGAAGAAGATACTGGAAAGCEST: gi|86070587|gb|DR366344.1|DR366344
genomic: GTGATGGTGTCTCTGTTCCGTCGTCAGATATCATTATTCTCGATGTTGGAgtaggttctt ... tctattgaagGGGATGACATGTGGAGGGTGTTCAGCAAGTGTGAAGAAGATACTGGAAAGC
EST: GTGATGGTGTCTCTGTTCCGTCGTCAGATATCATTATTCTCGATGTTGGA GGGATGACATGTGGAGGGTGTTCAGCAAGTGTGAAGAAGATACTGGAAAGCEST: gi|125029742|gb|EL102011.1|EL102011
genomic: GTGATGGTGTCTCTGTTCCGTCGTCAGATATCATTATTCTCGATGTTGGAgtaggttctt ... tctattgaagGGGATGACATGTGGAGGGTGTTCAGCAAGTGTGAAGAAGATACTGGAAAGC
EST: TTATTCTCGATGTTGGA GGGATGACATGTGGAGGGTGTTCAGCAAGTGTGAAGAAGATACTGGAAAGC
genomic: TTATTCTCGATGTTGGAgtaggttctt ... tctattgaagGGGATGACATGTGGAGGGTGTTCAGCAAGTGTGAAGAAGATACTGGAAAGC
tggattcactccagtagtgtaatgttactaacatggatgttctgctctattgaagGGGATGACATGTGGAGGGTGTTCAGCAAGTGTGAAGAAGATACTGGAAAGCCAA
tactaac putative branch site (score: 0)
ttctgctct putative PPT
taatgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggttcttctctctctttctatatgattttggattcactccagtagtgtaatgttactaacatggatgttctgctctattgaagGGGATGACATGTGGAGGGTGTTCAGCAAGTGTGAAGAAGATACTGGAAAGCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG