1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aatgatagtgttgattgataagaataaaatcacgagtatcatcaagtgattaatataagagaatgcgtgtgatgattttttgaatgggaccaccaaccagGTAAGGGCAACGGAACAGGGGACGTTGGATCGGACACAAGGACATGGTTAAGTGCTGCTCTCTCCAACCAAGCCACTTGTATGGAAGGCTTCGATGGTAC
species | Arabidopsis thaliana |
transcript | AT4G33220.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGCTTCTGAGAATCCAAAAG GTAAGGGCAACGGAACAGGGGACGTTGGATCGGACACAAGGACATGGTTAAEST: gi|116468560|gb|EG511152.1|EG511152
genomic: TGCTTCTGAGAATCCAAAAGgtaccttaaa ... caccaaccagGTAAGGGCAACGGAACAGGGGACGTTGGATCGGACACAAGGACATGGTTAA
EST: TTCTTCAGAGGAGCTCACTTGGTCTGCTTCTGCTTCTGAGAATCCAAAAG GTAAGGGCAACGGAACAGGGGACGTTGGATCGGACACAAGGACATGGTTAAEST: gi|124719836|gb|EH811238.1|EH811238
genomic: TTCTTCAGAGGAGCTCACTTGGTCTGCTTCTGCTTCTGAGAATCCAAAAGgtaccttaaa ... caccaaccagGTAAGGGCAACGGAACAGGGGACGTTGGATCGGACACAAGGACATGGTTAA
EST: CTGCTTCTGAGAATCCAAAAG GTAAGGGCAACGGAACAGGGGACGTTGGATCGGACACAAGGACATGGTTAAEST: gi|125043517|gb|EL115786.1|EL115786
genomic: CTGCTTCTGAGAATCCAAAAGgtaccttaaa ... caccaaccagGTAAGGGCAACGGAACAGGGGACGTTGGATCGGACACAAGGACATGGTTAA
EST: TTCTTCAGAGGAGCTCACTTGGTCTGCTTCTGCTTCTGAGAATCCAAAAG GTAAGGGCAACEST: gi|164096683|gb|ES033370.1|ES033370
genomic: TTCTTCAGAGGAGCTCACTTGGTCTGCTTCTGCTTCTGAGAATCCAAAAGgtaccttaaa ... caccaaccagGTAAGGGCAAC
EST: GTCTGCTTCTGCTTCTGAGAATCCAAAAG GTAAGGGCAACGGAACAGGGGACGTTGGATCGGACACAAGGACATGGTTAA
genomic: GTCTGCTTCTGCTTCTGAGAATCCAAAAGgtaccttaaa ... caccaaccagGTAAGGGCAACGGAACAGGGGACGTTGGATCGGACACAAGGACATGGTTAA
gtgattaatataagagaatgcgtgtgatgattttttgaatgggaccaccaaccagGTAAGGGCAACGGAACAGGGGACGTTGGATCGGACACAAGGACATGGTTAAGTGCTGCTCTCTCCAACCAAGCCACTTGTATGGAAGGCTTCGATGGTAC
gattaat putative branch site (score: 3)
taatataagagaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgatagtgttgattgataagaataaaatcacgagtatcatcaagtgattaatataagagaatgcgtgtgatgattttttgaatgggaccaccaaccagGTAAGGGCAACGGAACAGGGGACGTTGGATCGGACACAAGGACATGGTTAAGTGCTGCTCTCTCCAACCAAGCCACTTGTATGGAAGGCTTCGATGGTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - aataaaa
- - - - - - - - - - - - - - - - - - - tcatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aagagaa