1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaactctcggcgcgattttctcgtcgattattgatacaattcgtttcaaaactcagaagagacttttcgtttttttctttgcagCCGAAGCCGGGTAGCGACGGGTCATATCCGGTAGATAAAGCAAAGGCTGTGAGTGGAGATAAGCTTCTCAGAAGCATTATGCAGGATAACAAAATTGAAC
species | Arabidopsis thaliana |
transcript | AT4G32590.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATTTCTGCAGTGACGCCTCTTGAGATAGAGCTCGAGTTCTTCGGT CCGAAGCCGGGTAGCGACGGGTCATATCCGGTAGATAAAGCAAAGGCTEST: gi|125240425|gb|EL254510.1|EL254510
genomic: ATTTCTGCAGTGACGCCTCTTGAGATAGAGCTCGAGTTCTTCGGTgtaactctcg ... ttctttgcagCCGAAGCCGGGTAGCGACGGGTCATATCCGGTAGATAAAGCAAAGGCT
EST: AGGGGATTTCTGCAGTGACGCCTCTTGAGATAGAGCTCGAGTTCTTCGGT CCGAAGCCGGGTAGCGACGGGTCATATCCGGTAGATAAA
genomic: AGGGGATTTCTGCAGTGACGCCTCTTGAGATAGAGCTCGAGTTCTTCGGTgtaactctcg ... ttctttgcagCCGAAGCCGGGTAGCGACGGGTCATATCCGGTAGATAAA
attgatacaattcgtttcaaaactcagaagagacttttcgtttttttctttgcagCCGAAGCCGGGTAGCGACGGGTCATATCCGGTAGATAAAGCAAAGGCTGTGAGTGGAGATAAGCTTCTCAGAAGCATTATGCAGGATAACAAAATTGAAC
tattgat putative branch site (score: 3)
cttttcgtttttttct putative PPT
tttttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactctcggcgcgattttctcgtcgattattgatacaattcgtttcaaaactcagaagagacttttcgtttttttctttgcagCCGAAGCCGGGTAGCGACGGGTCATATCCGGTAGATAAAGCAAAGGCTGTGAGTGGAGATAAGCTTCTCAGAAGCATTATGCAGGATAACAAAATTGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC