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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgacaaatcagctctgctaaaatactcacaaagtctcgtgatcatattttgtggatcacatcattgtcttatttttggaattgcttatcctcgcactagttcactgatttgagatctgtgcagTTAATTTTGTGCTCCATAGCGATTCCATGGCTTCTTTAATGTTATCTCTCGGTTCCACTTCTCTGTTACCGCGCGAGATTAACAAG

Basic information

species Arabidopsis thaliana
transcript AT4G31990.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|152038432|gb|AV822767.2|AV822767
EST:     ATCTCTCGATCTGATCGTTATCGAAACCGCGCGATTCTAACCAAGTCCAG                         TTAATTTTGTGCTCCATAGCGATTCCATGGCTTCTTTAATGTTATCTCTCG
genomic: ATCTCTCGATCTGATCGTTATCGAAACCGCGCGATTCTAACCAAGTCCAGgtgacaaatc ... atctgtgcagTTAATTTTGTGCTCCATAGCGATTCCATGGCTTCTTTAATGTTATCTCTCG
EST: gi|125325094|gb|EL339174.1|EL339174
EST:     TCTGATCGTTATCGAAACCGCGCGATTCTAACCAAGTCCAG                         TTAATTTTGTGCTCCATAGCGATTCCA
genomic: TCTGATCGTTATCGAAACCGCGCGATTCTAACCAAGTCCAGgtgacaaatc ... atctgtgcagTTAATTTTGTGCTCCATAGCGATTCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatttttggaattgcttatcctcgcactagttcactgatttgagatctgtgcagTTAATTTTGTGCTCCATAGCGATTCCATGGCTTCTTTAATGTTATCTCTCGGTTCCACTTCTCTGTTACCGCGCGAGATTAACAAG
                                 cactgat  putative branch site (score: 3)