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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtgacggcgaaatcgaatagactctacatttgctcgtattcgagtttcctttgctaacctttttcatgtttcttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGACGATGACCAGAAACT

Basic information

species Arabidopsis thaliana
transcript AT4G31700.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G31700.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 1
-----------------gtgcgtgacggcgaaatcgaatagactctacatttgctcgta---ttcgagtttccttt----gctaaccttt--ttcatgtt-------tcttcgttt-cagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGACGATGACCAGAAACT
                 |    ||  ||      |  ||   ||    ||||  | |||   || || |||  |||    | |  | | |  ||| |||         |||||||| ||||||||| | ||||| || || || || ||||||||||||||||||||||| || |||||||| ||
gtaagacgctcctcgtcgccgttgctggatcccccagatgagctagggattttatggtagggttagatttttttttcgtgggtggcttctgattcgtgtggtttccgccttcgttttcagTTCAACATCGCGAACCCGACCACCGGGTGCCAGAAGAAGCTCGAGATCGATGACGACCAGAAGCT

upper sequence: AT4G31700.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: LOC_Os03g27260.1 (Oryza sativa), 3'ss of exon 1
--------------------------------------gtgcgtgacggcgaaatcgaatagactctacatttgctcgtattcgagtttcctttgctaacctttttcatgtttcttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGACGATGACCAGAAACT
                                      |  |||  ||      ||     |  | |   ||    ||   |    | |  |||  |   |    | ||| |  || |   ||||||||| | || || || || || || ||||||||||||||||||||||| || |||||||| ||
gtacccatttctcctcctcccctccccgcgggcgacgtggtcgtctcgatccggtccggctggttgtttcttgtagcgcggtttgatctgattttgtggtcgccctgatgatgttttgcg-cagTTCAACATCGCCAACCCGACCACCGGGTGCCAGAAGAAGCTCGAGATCGATGACGACCAGAAGCT

upper sequence: AT4G31700.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 1
-------------------------------------------------------------------------gtgcgtgacggcgaaatcgaatagactctacatttgctcgtattcgagtttcctttgctaacctttttcatgtttcttcgttt-cagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGACGATGACCAGAAACT
                                                                         | |   |  | |||| |||  |  | |    |||  | | |||  | || | ||| | |      ||||   || |  | | | ||||||||| | |||||||| || |||||||||||||||||||||||||||||||| || | ||||||
gttctcttcttcccaaaccctagttttttatattgctgtcgtatcttctctctgctacgtcgttttttgttttgcgttcgttgccgaagtcgttttaatttcttattgtcgcttat--gtgtattcttcgttgcttcatttcgctttgcgccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT

upper sequence: AT4G31700.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA15G08210.1 (Glycine max), 3'ss of exon 1
--gtgcgtgacggcgaaatcgaatagactctacatttgct-cgtattcgagtttcctttgctaacctttttcatgtttc-ttcgttt--cagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGACGATGACCAGAAACT
   ||  |  |   |||| |   ||   | |   | |||| ||  |||  | |        |||   | | |         | ||||  ||||||||| |||||||||| || ||||| || ||||||||||| |||||||| ||||||| ||| ||
gtttgttttcctctgaaaccc--taatttttctctctgcttcgatttcttgctattgggattaattatgtacgcacacaacttgttttgcagTTCAACATTGCGAATCCCACCACTGGTTGTCAGAAGAAGCTGGAGATCGATGATGACCTGAAGCT

upper sequence: AT4G31700.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA13G31130.1 (Glycine max), 3'ss of exon 2
gtgcgtgacggcgaaatcgaatagactctacatttgct-cgtattcgagtttcctttgctaacctttttc--atgtttcttcgttt-cagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGACGATGACCAGAAACT
||  ||         |     ||   |     | |||| ||  |||  |         ||||   | | |  |     |||| ||| ||||||||| |||||||||| || || || || ||||||||||| |||||||| ||||||| ||| ||
gtttgttgtcctctgaaaccctacttttgctttctgcttcgatttcttgccattgggactaattatgtccgcacacaacttcttttgcagTTCAACATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAGATCGATGATGACCTGAAGCT

upper sequence: AT4G31700.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA13G24630.1 (Glycine max), 3'ss of exon 1
gtgcgtgacggcgaaatcgaatagactctacatttgctcgtattcgagtttcctttgctaacctttttcatgtttcttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGACGATGACCAGAAACT
|||  || |   |||  | ||| |  ||    ||||    |||| | || |   | ||| |    | |   ||||    | | ||||||||| |||| ||||| || ||||| |||||||||||||| || ||||| || |||| ||| ||
gtgt-tgtctctgaaccctaattgcttccgtgtttgg--atatttgtgtgtttgtcgctgaaacatgttcggtttt---gctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT

upper sequence: AT4G31700.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA07G31840.2 (Glycine max), 3'ss of exon 1
gtgcgtgacggcgaaatcgaatagactctacatttgctcgtattcgagtttcctttgctaacctttttcatgtttcttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGACGATGACCAGAAACT
|||  || |    ||  | ||| |  ||    ||||    | |  | ||||        ||| | ||  || ||||| |     |||||||| |||| ||||| || ||||| |||||||||||||| || ||||| || |||| ||| ||
gtgt-tgtctctaaaccctaattgcttccctgtttggatttttgtgtgtttatcgctgaaacatattcgatttttctac-----agTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT

upper sequence: AT4G31700.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA07G31840.3 (Glycine max), 3'ss of exon 1
gtgcgtgacggcgaaatcgaatagactctacatttgctcgtattcgagtttcctttgctaacctttttcatgtttcttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGACGATGACCAGAAACT-----------------------------------
|||  || |    ||  | ||| |  ||    ||||    | |  | ||||        ||| | ||  || ||||| |     |||||||| |||| ||||| || ||||| |||||||||||||| || ||||| || |||| ||| ||                                   
gtgt-tgtctctaaaccctaattgcttccctgtttggatttttgtgtgtttatcgctgaaacatattcgatttttctac-----agTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTGTAATCATTTCACTCTCTCTTCAATTTTCATTTGT

upper sequence: AT4G31700.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 1
-----gtgcgtgacggcgaaatcgaatagactctacatttgctcgtattcgagtttcctttg---ctaacctttt-tcatgtttcttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGACGATGACCAGAAACT
      | |  ||   | || | | | |  |   |  |  |  | |  |  | | |         ||||  |  | |  ||| | |   || ||||||||  | |||||||| || || ||||||||||||||||| ||||| |||||||||||||||||
gttcgatccacgaaaaccaatttgca-attcatgatctccggccattcttcaatgtttcaaaaccctaatttgatattctgtgtgtgttttgcagTTCAATATCGCGAATCCGACCACAGGATGCCAGAAGAAGCTTGAGATTGACGATGACCAGAAACT

upper sequence: AT4G31700.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv07s0191g00060.t01 (Vitis vinifera), 3'ss of exon 1
-----gtgcgtgacggcgaaatcgaata---gactctacatttgctcgtattcgagtttcctttgctaacctttttcatgtttcttcg--tttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGACGATGACCAGAAACT
      ||  | |   |  |    | ||    |  |||| | |  || | |   |  ||  ||   ||    | |     |||  | |  || ||||||||  |||||||||| || || || || ||||| |||||||| |||||||| |||||||||||
gttagatgaatcataccttatgtcattatgaaaacctacctcttatcttttataa--ttaattaattatttatctgtgctttttctgggcttgcagTTCAATATTGCGAATCCTACGACAGGGTGTCAGAAAAAGCTCGAAATCGACGACGACCAGAAACT

upper sequence: AT4G31700.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv03s0017g01350.t01 (Vitis vinifera), 3'ss of exon 1
--gtgcgtgacggcgaaatc--gaatagactctacatttgctcgtattcgagtttcctttgctaacctttttcatgtttcttcgttt----cagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGACGATGACCAGAAACT
   | | |  |  | ||  |   | | ||  || | ||  || |  |        |  ||| |||   ||  |   | |||||| ||    ||||||||  | || ||||| ||||| ||||| ||||||||||||||||| || || || ||||||||
gttttcctctcaccaaagccctaatttgatgctgctttctcttgattctcttcaactcttggtaaatcttaactcctctcttcgcttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86037914|gb|DR333669.1|DR333669
EST:     AGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: AGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|124765200|gb|EH855330.1|EH855330
EST:     GACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGA
genomic: GACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGA
EST: gi|86037920|gb|DR333675.1|DR333675
EST:     CTAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CTAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037899|gb|DR333654.1|DR333654
EST:     CTAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CTAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037936|gb|DR333691.1|DR333691
EST:     CTAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CTAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037896|gb|DR333651.1|DR333651
EST:     TAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: TAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037902|gb|DR333657.1|DR333657
EST:     AGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: AGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037894|gb|DR333649.1|DR333649
EST:     AGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: AGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037926|gb|DR333681.1|DR333681
EST:     AGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: AGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037939|gb|DR333694.1|DR333694
EST:     TAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: TAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|164170482|gb|ES161109.1|ES161109
EST:     AGACGTCGAAGATGAAG                         TTCAACGTTGCGAATACCAACTACTGGATGCCAGAAGAAGCTCGAGATCGA
genomic: AGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAAT-CCAACTACTGGATGCCAGAAGAAGCTCGAGATCGA
EST: gi|86037901|gb|DR333656.1|DR333656
EST:     TAGACGTCGAAGATGAAG                         TTCAACGTTGCGAAT-CAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: TAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037925|gb|DR333680.1|DR333680
EST:     AGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: AGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037945|gb|DR333700.1|DR333700
EST:     AGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: AGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037952|gb|DR333707.1|DR333707
EST:     AGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: AGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|124718169|gb|EH809571.1|EH809571
EST:     CTAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CTAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037916|gb|DR333671.1|DR333671
EST:     TAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: TAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037923|gb|DR333678.1|DR333678
EST:     TAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: TAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037886|gb|DR333641.1|DR333641
EST:     CTAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CTAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037934|gb|DR333689.1|DR333689
EST:     CTAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CTAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|164156826|gb|ES080616.1|ES080616
EST:     CTAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGC
genomic: CTAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGC
EST: gi|86037919|gb|DR333674.1|DR333674
EST:     TAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: TAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037930|gb|DR333685.1|DR333685
EST:     AGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: AGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|116452354|gb|EG494946.1|EG494946
EST:     AGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: AGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037891|gb|DR333646.1|DR333646
EST:     GTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: GTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|164144357|gb|ES104326.1|ES104326
EST:     AGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: AGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037918|gb|DR333673.1|DR333673
EST:     CTAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGSTCGAGATCGAC
genomic: CTAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|124877488|gb|EH956925.1|EH956925
EST:     AGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAA
genomic: AGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAA
EST: gi|86037921|gb|DR333676.1|DR333676
EST:     CTAGACGTCGAAGATGAAG                         TTCAACGTTGAGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CTAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037940|gb|DR333695.1|DR333695
EST:     CTAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CTAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037947|gb|DR333702.1|DR333702
EST:     AGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: AGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037946|gb|DR333701.1|DR333701
EST:     AGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: AGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|116444032|gb|EG486624.1|EG486624
EST:     CTAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CTAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037905|gb|DR333660.1|DR333660
EST:     GTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: GTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037943|gb|DR333698.1|DR333698
EST:     CTAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAS
genomic: CTAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|164043763|gb|ES184679.1|ES184679
EST:     TAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: TAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037884|gb|DR333639.1|DR333639
EST:     CTAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CTAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037890|gb|DR333645.1|DR333645
EST:     AGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: AGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|125307336|gb|EL321421.1|EL321421
EST:     AGACGTCGAGGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: AGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|164133150|gb|ES096505.1|ES096505
EST:     CTAGACGTCGAAGATGAAG                         TTCAACGTTGC-AATCCAACTACTGGATGCCAGAAGAAGC
genomic: CTAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGC
EST: gi|86037913|gb|DR333668.1|DR333668
EST:     AGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: AGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037948|gb|DR333703.1|DR333703
EST:     TAGACGTCGAAGATGAAG                         TTCAACGTTGCGAAT-CAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: TAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037887|gb|DR333642.1|DR333642
EST:     CTAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CTAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|125045533|gb|EL117802.1|EL117802
EST:     CTAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAG
genomic: CTAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAG
EST: gi|86037908|gb|DR333663.1|DR333663
EST:     AGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: AGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|163980543|gb|ES174520.1|ES174520
EST:     AGACGTCGAAGAATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGA
genomic: AGACGTCGAAG-ATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGA
EST: gi|86037907|gb|DR333662.1|DR333662
EST:     CTAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CTAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037942|gb|DR333697.1|DR333697
EST:     TAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: TAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037935|gb|DR333690.1|DR333690
EST:     AGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: AGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|125321083|gb|EL335168.1|EL335168
EST:     AGACGTCGAAGATG-AG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: AGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037955|gb|DR333710.1|DR333710
EST:     TAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: TAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|116396684|gb|EG439276.1|EG439276
EST:     CGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|124984721|gb|EL057358.1|EL057358
EST:     CTAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CTAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037917|gb|DR333672.1|DR333672
EST:     TAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: TAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037927|gb|DR333682.1|DR333682
EST:     AGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: AGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037903|gb|DR333658.1|DR333658
EST:     CTAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CTAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037931|gb|DR333686.1|DR333686
EST:     CTAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CTAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037882|gb|DR333637.1|DR333637
EST:     TAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: TAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037954|gb|DR333709.1|DR333709
EST:     TAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: TAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037950|gb|DR333705.1|DR333705
EST:     AGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: AGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037937|gb|DR333692.1|DR333692
EST:     CTAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CTAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037900|gb|DR333655.1|DR333655
EST:     TAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: TAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037924|gb|DR333679.1|DR333679
EST:     AGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: AGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037941|gb|DR333696.1|DR333696
EST:     TAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: TAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037933|gb|DR333688.1|DR333688
EST:     TAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: TAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037883|gb|DR333638.1|DR333638
EST:     AGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: AGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037906|gb|DR333661.1|DR333661
EST:     CTAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CTAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037889|gb|DR333644.1|DR333644
EST:     AGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: AGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|164188004|gb|ES132122.1|ES132122
EST:     AGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCCAACTACTGGATGCCAGAAGAAGC
genomic: AGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCC-AACTACTGGATGCCAGAAGAAGC
EST: gi|86037932|gb|DR333687.1|DR333687
EST:     AGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: AGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037938|gb|DR333693.1|DR333693
EST:     AGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: AGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|164072255|gb|ES074398.1|ES074398
EST:     AGACGTCGAAGATGAAG                         TTCAACGTTGCGAA-CCAACTACTGGATGCCAGAAGAAGCTCGAGA
genomic: AGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGA
EST: gi|86037909|gb|DR333664.1|DR333664
EST:     AGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: AGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037893|gb|DR333648.1|DR333648
EST:     CTAGACGTCGGAAGATGAAG                         TTCAACGTTGAGAATCCAACGTACTGGATGCCAGAAGAAGCTCGAGATCGA
genomic: CTAGACGTC-GAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAAC-TACTGGATGCCAGAAGAAGCTCGAGATCGA
EST: gi|86037949|gb|DR333704.1|DR333704
EST:     TAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: TAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037953|gb|DR333708.1|DR333708
EST:     TAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: TAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037912|gb|DR333667.1|DR333667
EST:     AGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: AGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|164162500|gb|ES128668.1|ES128668
EST:     AGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGA
genomic: AGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGA
EST: gi|86037911|gb|DR333666.1|DR333666
EST:     TAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: TAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037915|gb|DR333670.1|DR333670
EST:     CTAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CTAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037928|gb|DR333683.1|DR333683
EST:     TAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: TAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|125126119|gb|EL171460.1|EL171460
EST:     TAGACGTCGAAGATGAAG                         TTCAACGTTGCGAGTCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: TAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037922|gb|DR333677.1|DR333677
EST:     CTAGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CTAGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|86037885|gb|DR333640.1|DR333640
EST:     AGACGTCGAAGATGAAG                         TTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: AGACGTCGAAGATGAAGgtgcgtgacg ... ttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgctcgtattcgagtttcctttgctaacctttttcatgtttcttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGACGATGACCAGAAACT
                        tgctaac  putative branch site (score: 1)
                              cctttttcatgtttct  CT-rich tract
                                tttttcat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcgtgacggcgaaatcgaatagactctacatttgctcgtattcgagtttcctttgctaacctttttcatgtttcttcgtttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGACGATGACCAGAAACT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC