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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagttgaagctgagctgagttattaaagcatctgatttcagcttaattcacgaaaattttcattcttatactaacatgtatatatatgtttctattttagGGTGTTGACGGTGTAGAGCTTCACGAAACATAAACTTTCATTTCTTCTAGCTTCTTGATTTGCTCTTAAAG

Basic information

species Arabidopsis thaliana
transcript AT4G31170.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86051557|gb|DR347312.1|DR347312
EST:     CTCCTCCTCCACCTCTTGTTTAGGTTCTTAGCACTGAAATTTGATCAGAA                         GGTGTTGACGGTGTAGAGCTTCACGAAACATAAACTTTCATTTCTTCTAGC
genomic: CTCCTCCTCCACCTCTTGTTTAGGTTCTTAGCACTGAAATTTGATCAGAAgtaagcttgt ... tctattttagGGTGTTGACGGTGTAGAGCTTCACGAAACATAAACTTTCATTTCTTCTAGC
EST: gi|125197993|gb|EL212947.1|EL212947
EST:     GGTTCTTAGCACTGAAATTTGATCAGAA                         GGTGTTGACGGTGTAGAGCTTCACGAAACATAAAACTTTCATTTCTTTCTA
genomic: GGTTCTTAGCACTGAAATTTGATCAGAAgtaagcttgt ... tctattttagGGTGTTGACGGTGTAGAGCTTCACGAAACATAAA-CTTTCATTTCTT-CTA
EST: gi|86051555|gb|DR347310.1|DR347310
EST:     CTCCTCCTCCACCTCTTGTTTAGGTTCTTAGCACTGAAATTTGATCAGAA                         GGTGTTGACGGTGTAGAGCTTCACGAAACAGAAACTTTCATTTCTTCTAGC
genomic: CTCCTCCTCCACCTCTTGTTTAGGTTCTTAGCACTGAAATTTGATCAGAAgtaagcttgt ... tctattttagGGTGTTGACGGTGTAGAGCTTCACGAAACATAAACTTTCATTTCTTCTAGC
EST: gi|116384332|gb|EG426924.1|EG426924
EST:     CTCCTCCTCCACCTCTTGTTTAGGTTCTTAGCACTGAAATTTGATCAGAA                         GGTGTTGACGGTGTAGAGCTTCACGAAACATAAACTTTCATTTCTTCTAGC
genomic: CTCCTCCTCCACCTCTTGTTTAGGTTCTTAGCACTGAAATTTGATCAGAAgtaagcttgt ... tctattttagGGTGTTGACGGTGTAGAGCTTCACGAAACATAAACTTTCATTTCTTCTAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcacgaaaattttcattcttatactaacatgtatatatatgtttctattttagGGTGTTGACGGTGTAGAGCTTCACGAAACATAAACTTTCATTTCTTCTAGCTTCTTGATTTGCTCTTAAAG
                       tactaac  putative branch site (score: 0)
                                           tttctatttt  putative PPT
       aaaattttcattctta  TA-rich tract