1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cttttctttatctgggctgtctaatattctttgctctttttccgcatggcctatctgtgaggtatcttactttgtctcctgggttttgggtttcttgcagAATAAAGGGACTTCATTTACAGCAACTGGAGCTGTTTTTATTGTTTACCTCCAAGCGCATAATTAAACGAGAGGCATGAAGAACTGCTGAATTCAATCAA
species | Arabidopsis thaliana |
transcript | AT4G30710.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGAATCACGAGACTTTGATTACTTTTGGCACTCTTATGTTTTCTTACTG AATAAAGGGACTTCATTTACAGCAACTGGAGCTGTTTTTATTGTTTACCTCEST: gi|116443791|gb|EG486383.1|EG486383
genomic: GAGAATCACGAGACTTTGATTACTTTTGGCACTCTTATGTTTTCTTACTGgtatgattct ... tttcttgcagAATAAAGGGACTTCATTTACAGCAACTGGAGCTGTTTTTATTGTTTACCTC
EST: GAGAATCACGAGACTTTGATTACTTTTGGCACTCTTATGTTTTCTTACTG AATAAAGGGACTTCATTTACAGCAACTGGAGCTGTTTTTATTGTTTACCTC
genomic: GAGAATCACGAGACTTTGATTACTTTTGGCACTCTTATGTTTTCTTACTGgtatgattct ... tttcttgcagAATAAAGGGACTTCATTTACAGCAACTGGAGCTGTTTTTATTGTTTACCTC
atggcctatctgtgaggtatcttactttgtctcctgggttttgggtttcttgcagAATAAAGGGACTTCATTTACAGCAACTGGAGCTGTTTTTATTGTTTACCTCCAAGCGCATAATTAAACGAGAGGCATGAAGAACTGCTGAATTCAATCAA
atcttac putative branch site (score: 3)
tttcttgc putative PPT
tatctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttttctttatctgggctgtctaatattctttgctctttttccgcatggcctatctgtgaggtatcttactttgtctcctgggttttgggtttcttgcagAATAAAGGGACTTCATTTACAGCAACTGGAGCTGTTTTTATTGTTTACCTCCAAGCGCATAATTAAACGAGAGGCATGAAGAACTGCTGAATTCAATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC