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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttaattcgatttctctgtatttggattgtggtttagtgattcatcgtttggataaaggaatgattttgcagcttctggtgctagattagtgtcgttgaaactctctggttctgttcatgtttgtagTTTTGGCAAGAGACTGATAAAGCAGCGTATCTAGTGAGGCAATACTTTTACAGTAATCTACATGATCGCTTGAGTACGAGGCCTTTCCTCAGTCTTGTAG

Basic information

species Arabidopsis thaliana
transcript AT4G29380.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G29380.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv11s0016g03000.t01 (Vitis vinifera), 3'ss of exon 1
gttttaattcgatttctctgtatttggattgtggtttagtgattcatcgtttggataaaggaatgattttgcagcttctggtgctagattagtgtcgttgaaactctctggttctgtt-catgtttgtagTTTTGGCAAGAGACTGATAAAGCAGCGTATCTAGTGAGGCAATACTTTTACAGTAATCTACATGATCGCTTGAGTACGAGGCCTTTCCTCAGTCTTGTAG
                   | |     |      || ||| |||     |||      | |  | | || |||  | ||  ||||   | ||  | |||||  | || || |    |    ||| || ||||||||   || |||||||||||||| |||||  ||||||||||||| | || |||||| |||||||| ||||||||  | ||||| ||||||||  | |
-------------------gaaaacaaa--aatcttgagttattttcttttt---cctatgttttacttggca--tccttctgct---taagcatagttgat-cactttgctcacatgatgtgtctgcagTTTTGGATTGAAACTGATAAAGCAGCTTATCTTTTGAGGCAATACTTCTTCAATAATCTTCATGATCGGTTGAGTACTCGACCTTTTCTCAGTCTCATTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttctggtgctagattagtgtcgttgaaactctctggttctgttcatgtttgtagTTTTGGCAAGAGACTGATAAAGCAGCGTATCTAGTGAGGCAATACTTTTACAGTAATCTACATGATCGCTTGAGTACGAGGCCTTTCCTCAGTCTTGTAG
          tagatta  TA-rich tract