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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaattattttctaaagtttccatttttgttaacaatataaaaaaaaaaattgaagtcaaagaagactgttccattttttgggtttcatataaaaaaaaaatgggtgatgacattttctgtaatctttcattgtatggatttgtttagATTCCGATCATCTTCACGTCGGAGTACACAATCTGAAACCGATCATCATCATCATCAATTGGGGTTTTTAATCCCTAGAATCAGTAGAAAATATCGATCA

Basic information

species Arabidopsis thaliana
transcript AT4G29220.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86060993|gb|DR356750.1|DR356750
EST:     CTCCTCCTCCTTACTTCTTGTTTCCATCTTGGTTTCAAATTTCTTCAAAG                         ATTCCGATCATCTTCACGTCGGAGTACACAATCTGAAACCGATCATCATCA
genomic: CTCCTCCTCCTTACTTCTTGTTTCCATCTTGGTTTCAAATTTCTTCAAAGgtgaattatt ... atttgtttagATTCCGATCATCTTCACGTCGGAGTACACAATCTGAAACCGATCATCATCA
EST: gi|86060998|gb|DR356755.1|DR356755
EST:     CTCCTCCTCCTTACTTCTTGTTTCCATCTTGGTTTCAAATTTCTTCAAAG                         ATTCCGATCATCTTCACGTCGGAGTACACAATCTGAAACCGATCATCATCA
genomic: CTCCTCCTCCTTACTTCTTGTTTCCATCTTGGTTTCAAATTTCTTCAAAGgtgaattatt ... atttgtttagATTCCGATCATCTTCACGTCGGAGTACACAATCTGAAACCGATCATCATCA
EST: gi|86060997|gb|DR356754.1|DR356754
EST:     CTCCTCCTCCTTACTTCTTGTTTCCATCTTGGTTTCAAATTTCTTCAAAG                         ATTCCGATCATCTTCACGTCGGAGTACACAATCTGAAACCGATCATCATCA
genomic: CTCCTCCTCCTTACTTCTTGTTTCCATCTTGGTTTCAAATTTCTTCAAAGgtgaattatt ... atttgtttagATTCCGATCATCTTCACGTCGGAGTACACAATCTGAAACCGATCATCATCA
EST: gi|86060992|gb|DR356749.1|DR356749
EST:     CTCCTCCTCCTTACTTCTTGTTTCCATCTTGGTTTCAAATTTCTTCAAAG                         ATTCCGATCATCTTCACGTCGGAGTACACAATCTGAAACCGATCATCATCS
genomic: CTCCTCCTCCTTACTTCTTGTTTCCATCTTGGTTTCAAATTTCTTCAAAGgtgaattatt ... atttgtttagATTCCGATCATCTTCACGTCGGAGTACACAATCTGAAACCGATCATCATC-
EST: gi|86060994|gb|DR356751.1|DR356751
EST:     CTCCTCCTCCTTACTTCTTGTTTCCATCTTGGTTTCAAATTTCTTCAAAG                         ATTCCGATCATCTTCACGTCGGAGTACAYAATCTGAAACCGATCATCATCA
genomic: CTCCTCCTCCTTACTTCTTGTTTCCATCTTGGTTTCAAATTTCTTCAAAGgtgaattatt ... atttgtttagATTCCGATCATCTTCACGTCGGAGTACACAATCTGAAACCGATCATCATCA
EST: gi|86060996|gb|DR356753.1|DR356753
EST:     CTCCTCCTCCTTACTTCTTGTTTCCATCTTGGTTTCAAATTTCTTCAAAG                         ATTCCGATCATCTTCACGTCGGAGTACACAATCTGAAACCGATCATCATCA
genomic: CTCCTCCTCCTTACTTCTTGTTTCCATCTTGGTTTCAAATTTCTTCAAAGgtgaattatt ... atttgtttagATTCCGATCATCTTCACGTCGGAGTACACAATCTGAAACCGATCATCATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaaaaatgggtgatgacattttctgtaatctttcattgtatggatttgtttagATTCCGATCATCTTCACGTCGGAGTACACAATCTGAAACCGATCATCATCATCATCAATTGGGGTTTTTAATCCCTAGAATCAGTAGAAAATATCGATCA
                                              tttgttt  CT-rich tract
                                             atttgttta  TA-rich tract