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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgaaaaatattataactttgaatactaaagattgatttcgtcgaacaaactcttttgattttgattttttgtgtggcagGTGGAATTCGAGCAATACCCAACTGGTCCTCACATTGCTTCTCGTATGCTTTTCACT

Basic information

species Arabidopsis thaliana
transcript AT4G28830.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116429478|gb|EG472070.1|EG472070
EST:     AGCAATTAGAAGGCTTGTTGGGTGATCTTGAACAGTTCTCCAATCCTAAA                         GTGGAATTCGAGCAATACCCAACTGGTCCTCACATTGCTTCTCGTATGCTT
genomic: AGCAATTAGAAGGCTTGTTGGGTGATCTTGAACAGTTCTCCAATCCTAAAgtatgtgaaa ... tgtgtggcagGTGGAATTCGAGCAATACCCAACTGGTCCTCACATTGCTTCTCGTATGCTT
EST: gi|124855221|gb|EH939658.1|EH939658
EST:     CAATTAGAAGGCTTGTTGGGTGATCTTGAACAGTTCTCCAATCCTAAA                         GTGGAATTCGAGCAATACCCAACTGGTCCTCACATTGCTTCTCGTATGCTT
genomic: CAATTAGAAGGCTTGTTGGGTGATCTTGAACAGTTCTCCAATCCTAAAgtatgtgaaa ... tgtgtggcagGTGGAATTCGAGCAATACCCAACTGGTCCTCACATTGCTTCTCGTATGCTT
EST: gi|19874619|gb|AU235450.1|AU235450
EST:     AGCAATTAGAAGGCTTGTTGGGTGATCTTGAACAGTTCTCCAATCCTAAA                         GTGGAATTCGAGCAATACCCAACTGGTCCTCACATTGCTTCTCGTATGCTT
genomic: AGCAATTAGAAGGCTTGTTGGGTGATCTTGAACAGTTCTCCAATCCTAAAgtatgtgaaa ... tgtgtggcagGTGGAATTCGAGCAATACCCAACTGGTCCTCACATTGCTTCTCGTATGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaaagattgatttcgtcgaacaaactcttttgattttgattttttgtgtggcagGTGGAATTCGAGCAATACCCAACTGGTCCTCACATTGCTTCTCGTATGCTTTTCACT
                                        ttttttgt  CT-rich tract
                            ttttgattttgatttt  TA-rich tract