1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtttgtaatttatgtatcttacttcaccgtgttgtttcgccgattttaccaattccagtgcattggtctctcttttgattaaattgctgtaacatgagaactgaaagattgaacctttgttcgagactagtgttaatctctgtccttgtgtgtctctggactctgttagTGGACATACCTTGAGAGATGAAGATCGTTCGCAGGGATTTTGTTCGTAATGGACCCGGAAGCGTTAAG
species | Arabidopsis thaliana |
transcript | AT4G27650.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGGAGCCGGAGTCTGAGCTGAAGCCCTGTATCTGTAACTCTTCCAACAG TGGACATACCTTGAGAGATGAAGATCGTTCGCAGGGATTTTGTTCGTAATGEST: gi|124885946|gb|EH964848.1|EH964848
genomic: CCGGAGCCGGAGTCTGAGCTGAAGCCCTGTATCTGTAACTCTTCCAACAGgtttgtaatt ... actctgttagTGGACATACCTTGAGAGATGAAGATCGTTCGCAGGGATTTTGTTCGTAATG
EST: CCGGAGCCGGAGTCTGAGCTGAAGCCCTGTATCTGTAACTCTTCCAACAG TGGACATACCTTGAGAGAEST: gi|86072170|gb|DR367927.1|DR367927
genomic: CCGGAGCCGGAGTCTGAGCTGAAGCCCTGTATCTGTAACTCTTCCAACAGgtttgtaatt ... actctgttagTGGACATACCTTGAGAGA
EST: CCGGAGCCGGAGTCTGAGCTGAAGCCCTGTATCTGTAACTCTTCCAACAG TGGACATACCTTGAGAGATGAAGATCGTTCGCAGGGATTTTGTTCGTAATG
genomic: CCGGAGCCGGAGTCTGAGCTGAAGCCCTGTATCTGTAACTCTTCCAACAGgtttgtaatt ... actctgttagTGGACATACCTTGAGAGATGAAGATCGTTCGCAGGGATTTTGTTCGTAATG
ctttgttcgagactagtgttaatctctgtccttgtgtgtctctggactctgttagTGGACATACCTTGAGAGATGAAGATCGTTCGCAGGGATTTTGTTCGTAATGGACCCGGAAGCGTTAAG
tgttaat putative branch site (score: 3)
ctctgtt putative PPT
tgttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtaatttatgtatcttacttcaccgtgttgtttcgccgattttaccaattccagtgcattggtctctcttttgattaaattgctgtaacatgagaactgaaagattgaacctttgttcgagactagtgttaatctctgtccttgtgtgtctctggactctgttagTGGACATACCTTGAGAGATGAAGATCGTTCGCAGGGATTTTGTTCGTAATGGACCCGGAAGCGTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA