Sequence
atgc intronic sequence ATGC exonic sequencegtgagtcacatctccacagcgatatctaatttgaacaagatgataattatgtgatctatcttaatattttggagttaaatattttttggtggggcagGCAAGGGTTGTGCAGGACACTGAGGTGCAATATAACTACTGTGTGTATGACTCGGACAGAGCTACAGGGTATGGAGTTGGAGCCTTTTTGTTCTCAGTGG
Basic information
species | Arabidopsis thaliana |
transcript | AT4G27435.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86033629|gb|DR329382.1|DR329382EST: ACCTCATTGCCTTTGGTTTAGCCGTTGCTGCTGAACAAAGAAGAAGCACT GCAAGGGTTGTGCAGGACACTGAGGTGCAATATAACTACTGTGTGTATGAC
genomic: ACCTCATTGCCTTTGGTTTAGCCGTTGCTGCTGAACAAAGAAGAAGCACTgtgagtcaca ... ggtggggcagGCAAGGGTTGTGCAGGACACTGAGGTGCAATATAACTACTGTGTGTATGAC
EST:
gi|86079505|gb|DR375262.1|DR375262EST: ACAAAGAAGAAGCACT GCAAGGGTTGTGCAGGACACTGAGGTGCAATATAACTACTGTGTGTATGAC
genomic: ACAAAGAAGAAGCACTgtgagtcaca ... ggtggggcagGCAAGGGTTGTGCAGGACACTGAGGTGCAATATAACTACTGTGTGTATGAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ataattatgtgatctatcttaatattttggagttaaatattttttggtggggcagGCAAGGGTTGTGCAGGACACTGAGGTGCAATATAACTACTGTGTGTATGACTCGGACAGAGCTACAGGGTATGGAGTTGGAGCCTTTTTGTTCTCAGTGG
tcttaat putative branch site (score: 3)
ttttttg putative PPT
atctatcttaatattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagtcacatctccacagcgatatctaatttgaacaagatgataattatgtgatctatcttaatattttggagttaaatattttttggtggggcagGCAAGGGTTGTGCAGGACACTGAGGTGCAATATAACTACTGTGTGTATGACTCGGACAGAGCTACAGGGTATGGAGTTGGAGCCTTTTTGTTCTCAGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG