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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttttggaaacctgaatcgtcttttttaatcatgtttaaattttatcactttttttttattcaccttatgatgtgtttgttcagGGGCTAGGCTTCCATTGTATGCATGTAAGAATCTGGTAAAATCCGGAGAGAAGCTTGTAATCAGTCATGAGGCTATAGAGCCTCCTGTAGCTTTTCTCGA

Basic information

species Arabidopsis thaliana
transcript AT4G26850.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124880245|gb|EH959147.1|EH959147
EST:     CTGTGGACGGAATTGCCTCGGCGCTTGTTGCCTTAACG                         GGGCTAGGCTTCCATTGTATGCATGTAAGAATCTGGTAAAATCCGGAGAGA
genomic: CTGTGGACGGAATTGCCTCGGCGCTTGTTGCCTTAACGgtacgttttg ... gtttgttcagGGGCTAGGCTTCCATTGTATGCATGTAAGAATCTGGTAAAATCCGGAGAGA
EST: gi|125320429|gb|EL334514.1|EL334514
EST:     GGATCCCGTCGGCTGTGGACGGAATTGCCTCGGCGCTTGTTGCCTTAACG                         GGGCTAGGCTTCCATTGTATGCATGTAAGAATCTGGTAAAATCCGGAGAGA
genomic: GGATCCCGTCGGCTGTGGACGGAATTGCCTCGGCGCTTGTTGCCTTAACGgtacgttttg ... gtttgttcagGGGCTAGGCTTCCATTGTATGCATGTAAGAATCTGGTAAAATCCGGAGAGA
EST: gi|163965818|gb|ES152630.1|ES152630
EST:     GGATCCCGTCGGCTGTGGACGGAATTGCCTCGGCGCTTGTTGCCTTAACG                         GGGCTAGGCTTCCATTGTAT
genomic: GGATCCCGTCGGCTGTGGACGGAATTGCCTCGGCGCTTGTTGCCTTAACGgtacgttttg ... gtttgttcagGGGCTAGGCTTCCATTGTAT
EST: gi|124851367|gb|EH935804.1|EH935804
EST:     GGATCCCGTCGGCTGTGGACGGAATTGCCTCGGCGCTTGTTGCCTTAACG                         GGGCTAGGCTTCCATTGTATG
genomic: GGATCCCGTCGGCTGTGGACGGAATTGCCTCGGCGCTTGTTGCCTTAACGgtacgttttg ... gtttgttcagGGGCTAGGCTTCCATTGTATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatgtttaaattttatcactttttttttattcaccttatgatgtgtttgttcagGGGCTAGGCTTCCATTGTATGCATGTAAGAATCTGGTAAAATCCGGAGAGAAGCTTGTAATCAGTCATGAGGCTATAGAGCCTCCTGTAGCTTTTCTCGA
                                              tttgttc  CT-rich tract
     tttaaattttatcact  TA-rich tract