Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaataaaatctcgattctgttttgaccaatcttggttcgatgtggtttgattccttgtgtaccgttatggctgatgctctatttgtataattcttaaacacaactcgattcctttagattaatgtagatcatactaagcaactttggttggttctgagtaaaccgattttgtccctggggcagATGAAGAAGAAGAGGATGAAAACGACAGTCCAATCGAAGAGGTCCGTTTAACCGTACCGATAACCGACGATCCATCTCTACCAGTTTTGACATTCCGTAC

Basic information

species Arabidopsis thaliana
transcript AT4G26590.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164090391|gb|ES082890.1|ES082890
EST:     CCAAGATCGTCATAGCCG                         ATGAAGAAGAAGAGGATGAAAACGACAGTCCAATCGAAGAGGTCCGTTTAA
genomic: CCAAGATCGTCATAGCCGgtaaataaaa ... cctggggcagATGAAGAAGAAGAGGATGAAAACGACAGTCCAATCGAAGAGGTCCGTTTAA
EST: gi|164137735|gb|ES079816.1|ES079816
EST:     GATCGTCATAGCCG                         ATGAAGAAGAAGAGGATGAAAACGACAGTCCAATCGAAGAGGTCCGTTTAA
genomic: GATCGTCATAGCCGgtaaataaaa ... cctggggcagATGAAGAAGAAGAGGATGAAAACGACAGTCCAATCGAAGAGGTCCGTTTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatactaagcaactttggttggttctgagtaaaccgattttgtccctggggcagATGAAGAAGAAGAGGATGAAAACGACAGTCCAATCGAAGAGGTCCGTTTAACCGTACCGATAACCGACGATCCATCTCTACCAGTTTTGACATTCCGTAC
                                      ttttgtccct  CT-rich tract
                                     attttgt  TA-rich tract