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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gagaatgatgaatcttgtttgctcctgtcaattcttctttaactgttttgcaatttgatgagctaataactgactatatctcatttccttcccatcgcagAATTTTTTGAGGTGTACAAAGCATTGCCTATTTGACGAACCAGGAAATGGTTAAAAG

Basic information

species Arabidopsis thaliana
transcript AT4G26570.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86019689|gb|DR315435.1|DR315435
EST:     ACCTTCAACCGNCGGAGCCGCCGCAAGGAAGGCTCATCATCCGCCGTGGC                         AATTTTTTGAGGTGTACAAAGCATTGCCTATTTGACGAACCAGGAAATGGT
genomic: ACCTTCAACCGCCGGAGCCGCCGCAAGGAAGGCTCATCATCCGCCGTGGCgtaaggcttt ... cccatcgcagAATTTTTTGAGGTGTACAAAGCATTGCCTATTTGACGAACCAGGAAATGGT
EST: gi|152035921|gb|BP864717.2|BP864717
EST:     ACCTTCAACCGCCGGAGCCGCCGCAAGGAAGGCTCATCATCCGCCGGGGC                         AATTTTTGGAGGTGTACAAAGCATTGCCTATTTGACGAACCAGGAAATGGT
genomic: ACCTTCAACCGCCGGAGCCGCCGCAAGGAAGGCTCATCATCCGCCGTGGCgtaaggcttt ... cccatcgcagAATTTTTTGAGGTGTACAAAGCATTGCCTATTTGACGAACCAGGAAATGGT
EST: gi|86019690|gb|DR315436.1|DR315436
EST:     ACCTTCAACCGNCGGAGCCGCCGCAAGGAAGGCTCATCATCCGCCGTGGC                         AATTTTTTGAGGTGTACAAAGCATTGCCTATTTGACGAACCAGGAAATGGT
genomic: ACCTTCAACCGCCGGAGCCGCCGCAAGGAAGGCTCATCATCCGCCGTGGCgtaaggcttt ... cccatcgcagAATTTTTTGAGGTGTACAAAGCATTGCCTATTTGACGAACCAGGAAATGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgcaatttgatgagctaataactgactatatctcatttccttcccatcgcagAATTTTTTGAGGTGTACAAAGCATTGCCTATTTGACGAACCAGGAAATGGTTAAAAG
                                 tctcatttccttccca  CT-rich tract
      aatttgat  TA-rich tract