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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttgagaaagtacttgtacacttaactaagtttggagttttgattttgatttgttttgtttgttgggttttacagAACATGCTTCGATGCAACGTATTACCGAGAAGAGCGATGTTTATAGTTACGGGGTGGTATTGTTAGAGGTTTTAACCGGAAAGCATCCGTTAGATCCGGA

Basic information

species Arabidopsis thaliana
transcript AT4G26540.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G26540.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv19s0015g01120.t01 (Vitis vinifera), 3'ss of exon 2
---------------------------gtaagcttgagaaagtacttgtacacttaactaagtttgg--agttttgatttt---gatttgttttgtttgttgggtttta-cagAACATGCTTCGATGCAACGTATTACCGAGAAGAGCGATGTTTATAGTTACGGGGTGGTATTGTTAGAGGTTTTAACCGGAAAGCATCCGTTAGATCCGGA
                            | |  || |   | |  |  |    |||| |   ||     | |  |||||||   | |   |||||||  | |||| ||| ||||||||||||| ||||||||||| || ||||||||||||||||| ||||  || |||||  |  | |||||||| || |||| |||||| ||||| ||   
gtaattcttcaattccattttattgttattaattttaattaatgttattttgattaatttcattccattaataatgatttttttgttcatttttgttcttggggtgttaacagAACATGCTTCAATGCAACGTATCACAGAGAAGAGCGATGTTTACAGTTTTGGTGTGGTTCTTCTGGAGGTTTTGACAGGAAGGCATCCCTTAGACCCAAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttaactaagtttggagttttgattttgatttgttttgtttgttgggttttacagAACATGCTTCGATGCAACGTATTACCGAGAAGAGCGATGTTTATAGTTACGGGGTGGTATTGTTAGAGGTTTTAACCGGAAAGCATCCGTTAGATCCGGA
                 ttttgattttgattt  TA-rich tract