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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacggctttacttctctcctgattgtatattgtcctagtcaacttcgtatttcgattacgatagtcatgtgtcttttggcatctttctcttagGCGGAGATGAAGTTCAAGGACAAGTGGCTCGCCTGTGTTTCCTTCGGGGAACAAACTTTCCGTTCGGAAATTTCAGATTC

Basic information

species Arabidopsis thaliana
transcript AT4G25970.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G25970.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA08G19310.1 (Glycine max), 3'ss of exon 1
gtacggctttacttctctcctgattgtatattgtcctagtcaacttcgt-atttcgattacgatagtcatgtgtcttttggcatctttctcttagGCGGAGATGAAGTTCAAGGACAAGTGGCTCGCCTGTGTTTCCTTCGGGGAACAAACTTTCCGTTCGGAAATTTCAGATTC
                    | |      |   | ||| |    ||    ||||   |||   |||     | |  |    | ||||| |  ||||||||||||||||||||||| || ||| | || ||  ||||| |||| ||||| ||||||||| |  | |  || ||   
-------------------gtaaacacgcacattactattttttttttccattttttttaaattagctgattcttctacttc-tctttgttgtagGCGGAGATGAAGTTCAAGGATAAATGGATTGCGTGCCTTTCCCTCGGAGAACAGACTTTCCGTACCAACACCTCTGACCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaacttcgtatttcgattacgatagtcatgtgtcttttggcatctttctcttagGCGGAGATGAAGTTCAAGGACAAGTGGCTCGCCTGTGTTTCCTTCGGGGAACAAACTTTCCGTTCGGAAATTTCAGATTC
                                         catctttctctt  CT-rich tract
         tattt  TA-rich tract