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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttatgtttcgactataatcatcatctcacattttcgaatttcagaattacttacatgtttttgtccggcgcagGGTCTTCTTTATGCGGGAAACGATACACTGTTCGAATCCACTGGTCTATACGGGAAG

Basic information

species Arabidopsis thaliana
transcript AT4G25720.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164076407|gb|ES034618.1|ES034618
EST:     AAATTGAAGTAGTTGCTGAGTTTCCTCATGATCCGGACGCCTTTACTCAG                         GGTCTTCTTTATGCGGGAAACGATACACTGTTCGAATCCACTGGTCTATAC
genomic: AAATTGAAGTAGTTGCTGAGTTTCCTCATGATCCGGACGCCTTTACTCAGgtttatgttt ... tccggcgcagGGTCTTCTTTATGCGGGAAACGATACACTGTTCGAATCCACTGGTCTATAC
EST: gi|86032522|gb|DR328275.1|DR328275
EST:     AAATTGAAGTAGTTGCTGAGTTTCCTCATGATCCGGACGCCTTTACTCAG                         GGTCTTCTTTATGCGGGAAACGATACACTGTTCGAATCCACTGGTCTATAC
genomic: AAATTGAAGTAGTTGCTGAGTTTCCTCATGATCCGGACGCCTTTACTCAGgtttatgttt ... tccggcgcagGGTCTTCTTTATGCGGGAAACGATACACTGTTCGAATCCACTGGTCTATAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catcatctcacattttcgaatttcagaattacttacatgtttttgtccggcgcagGGTCTTCTTTATGCGGGAAACGATACACTGTTCGAATCCACTGGTCTATACGGGAAG
                             tacttac  putative branch site (score: 1)
                                       tttttgtcc  putative PPT
                          aattactta  TA-rich tract