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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttctcactctctctttttgaaatttgtgggttggattggttttggttgttgatttgatcgatttctgtgttgttcgcagATTGTTGCTTCGCGTTGTGGTG

Basic information

species Arabidopsis thaliana
transcript AT4G23470.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86038887|gb|DR334642.1|DR334642
EST:     TAATGTTTGGCATACCGATCTTACCCACAGTATCCAGAACGATACTCCTT                         ATTGTTGCTTCGCGTTGTGGTG
genomic: TAATGTTTGGCATACCGATCTTACCCACAGTATCCAGAACGATACTCCTTgtaatttctc ... ttgttcgcagATTGTTGCTTCGCGTTGTGGTG
EST: gi|125155619|gb|EL185640.1|EL185640
EST:     TGTTTGGCATACCGATCTTACCCACAGTATCCAGAACGATACTCCTT                         ATTGTTGCTTCGCGTTGTGGTG
genomic: TGTTTGGCATACCGATCTTACCCACAGTATCCAGAACGATACTCCTTgtaatttctc ... ttgttcgcagATTGTTGCTTCGCGTTGTGGTG
EST: gi|164100865|gb|EL971397.1|EL971397
EST:     ACAGTATCCAGAACGATACTCCTT                         ATTGTTGCTTCGCGTTGTGGTG
genomic: ACAGTATCCAGAACGATACTCCTTgtaatttctc ... ttgttcgcagATTGTTGCTTCGCGTTGTGGTG
EST: gi|86038885|gb|DR334640.1|DR334640
EST:     TAATGTTTGGCATACCGATCTTACCCACAGTATCCAGAACGATACTCCTT                         ATTGTTGCTTCGCGTTGTGGTG
genomic: TAATGTTTGGCATACCGATCTTACCCACAGTATCCAGAACGATACTCCTTgtaatttctc ... ttgttcgcagATTGTTGCTTCGCGTTGTGGTG
EST: gi|116434599|gb|EG477191.1|EG477191
EST:     TAATGTTTGGCATACCGATCTTACCCACAGTATCCAGAACGATACTCCTT                         ATTGTTGCTTCGCGTTGTGGTG
genomic: TAATGTTTGGCATACCGATCTTACCCACAGTATCCAGAACGATACTCCTTgtaatttctc ... ttgttcgcagATTGTTGCTTCGCGTTGTGGTG
EST: gi|86038879|gb|DR334634.1|DR334634
EST:     TAATGTTTGGCATACCGATCTTACCCACAGTATCCAGAACGATACTCCTT                         ATTGTTGCTTCGCGTTGTGGTG
genomic: TAATGTTTGGCATACCGATCTTACCCACAGTATCCAGAACGATACTCCTTgtaatttctc ... ttgttcgcagATTGTTGCTTCGCGTTGTGGTG
EST: gi|301501098|gb|HO206638.1|HO206638
EST:     TAATGTTTGGCATACCGATCTTACCCACAGTATCCAGAACGATACTCCTT                         ATTGTTGCTTCGCGTTGTGGTG
genomic: TAATGTTTGGCATACCGATCTTACCCACAGTATCCAGAACGATACTCCTTgtaatttctc ... ttgttcgcagATTGTTGCTTCGCGTTGTGGTG
EST: gi|86038889|gb|DR334644.1|DR334644
EST:     TAATGTTTGGCATACCGATCTTACCCACAGTATCCAGAACGATACTCCTT                         ATTGTTGCTTCGCGTTGTGGTG
genomic: TAATGTTTGGCATACCGATCTTACCCACAGTATCCAGAACGATACTCCTTgtaatttctc ... ttgttcgcagATTGTTGCTTCGCGTTGTGGTG
EST: gi|164099037|gb|ES174355.1|ES174355
EST:     AGAACGATACTCCTT                         ATTGTTGCTTCGCGTTGTGGTG
genomic: AGAACGATACTCCTTgtaatttctc ... ttgttcgcagATTGTTGCTTCGCGTTGTGGTG
EST: gi|125312936|gb|EL327021.1|EL327021
EST:     TAATG-TTGG-ATACCGATCTTACCCACAGTATCCAGAACGATACTCCTT                         ATTGTTGCTTCGCGTTGTGGTGT
genomic: TAATGTTTGGCATACCGATCTTACCCACAGTATCCAGAACGATACTCCTTgtaatttctc ... ttgttcgcagATTGTTGCTTCGCGTTGTGGTGT
EST: gi|86038878|gb|DR334633.1|DR334633
EST:     TAATGTTTGGCATACCGATCTTACCCACAGTATCCAGAACGATACTCCTT                         ATTGTTGCTTCGCGTTGTGGTG
genomic: TAATGTTTGGCATACCGATCTTACCCACAGTATCCAGAACGATACTCCTTgtaatttctc ... ttgttcgcagATTGTTGCTTCGCGTTGTGGTG
EST: gi|86038880|gb|DR334635.1|DR334635
EST:     TAATGTTTGGCATACCGATCTTACCCACAGTATCCAGAACGATACTCCTT                         ATTGTTGCTTCGCGTTGTGGTG
genomic: TAATGTTTGGCATACCGATCTTACCCACAGTATCCAGAACGATACTCCTTgtaatttctc ... ttgttcgcagATTGTTGCTTCGCGTTGTGGTG
EST: gi|86038886|gb|DR334641.1|DR334641
EST:     TAATGTTTGGCATACCGATCTTACCCACAGTATCCAGAACGATACTCCTT                         ATTGTTGCTTCGCGTTGTGGTG
genomic: TAATGTTTGGCATACCGATCTTACCCACAGTATCCAGAACGATACTCCTTgtaatttctc ... ttgttcgcagATTGTTGCTTCGCGTTGTGGTG
EST: gi|86038882|gb|DR334637.1|DR334637
EST:     TAATGTTTGGCATACCGATCTTACCCACAGTATCCAGAACGATACTCCTT                         ATTGTTGCTTCGCGTTGTGGTG
genomic: TAATGTTTGGCATACCGATCTTACCCACAGTATCCAGAACGATACTCCTTgtaatttctc ... ttgttcgcagATTGTTGCTTCGCGTTGTGGTG
EST: gi|86038888|gb|DR334643.1|DR334643
EST:     TAATGTTTGGCATACCGATCTTACCAACAGTATCCAGAACGATACTCCTT                         ATTGTTGCTTCGCGTTGTGGTG
genomic: TAATGTTTGGCATACCGATCTTACCCACAGTATCCAGAACGATACTCCTTgtaatttctc ... ttgttcgcagATTGTTGCTTCGCGTTGTGGTG
EST: gi|301502433|gb|HO207973.1|HO207973
EST:     TAATGTTTGGCATACCGATCTTACCCACAGTATCCAGAACGATACTCCTT                         ATTGTTGCTTCGCGTTGTGGTG
genomic: TAATGTTTGGCATACCGATCTTACCCACAGTATCCAGAACGATACTCCTTgtaatttctc ... ttgttcgcagATTGTTGCTTCGCGTTGTGGTG
EST: gi|86038883|gb|DR334638.1|DR334638
EST:     TAATGTTTGGCATACCGATCTTACCCACAGTATCCAGAACGATACTCCTT                         ATTGTTGCTTCGCGTTGTGGTG
genomic: TAATGTTTGGCATACCGATCTTACCCACAGTATCCAGAACGATACTCCTTgtaatttctc ... ttgttcgcagATTGTTGCTTCGCGTTGTGGTG
EST: gi|86038884|gb|DR334639.1|DR334639
EST:     TAATGTTTGGCATACCGATCTTACCCACAGTATCCAGAACGATACTCCTT                         ATTGTTGCTTC
genomic: TAATGTTTGGCATACCGATCTTACCCACAGTATCCAGAACGATACTCCTTgtaatttctc ... ttgttcgcagATTGTTGCTTC
EST: gi|86038877|gb|DR334632.1|DR334632
EST:     TAATGTTTGGCATACCGATCTTACCCACAGTATCCAGAACGATACTCCTT                         ATTGTTGCTTCNNNGTTGTGGTG
genomic: TAATGTTTGGCATACCGATCTTACCCACAGTATCCAGAACGATACTCCTTgtaatttctc ... ttgttcgcagATTGTTGCTTCGC-GTTGTGGTG
EST: gi|86038881|gb|DR334636.1|DR334636
EST:     TAATGTTTGGCATACCGATCTTACCCACAGTATCCAGAACGATACTCCTT                         ATTGTTGCTTCGCGTTGTGGTG
genomic: TAATGTTTGGCATACCGATCTTACCCACAGTATCCAGAACGATACTCCTTgtaatttctc ... ttgttcgcagATTGTTGCTTCGCGTTGTGGTG
EST: gi|125267952|gb|EL282037.1|EL282037
EST:     TATCCAGAACGATACTCCTT                         ATTGTTGCTTCGCGTTGTGGTG
genomic: TATCCAGAACGATACTCCTTgtaatttctc ... ttgttcgcagATTGTTGCTTCGCGTTGTGGTG
EST: gi|116434598|gb|EG477190.1|EG477190
EST:     TAATGTTTGGCATACCGATCTTACCCACAGTATCCAGAACGATACTCCTT                         ATTGTTGCTTCGCGTTGTGGTG
genomic: TAATGTTTGGCATACCGATCTTACCCACAGTATCCAGAACGATACTCCTTgtaatttctc ... ttgttcgcagATTGTTGCTTCGCGTTGTGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgggttggattggttttggttgttgatttgatcgatttctgtgttgttcgcagATTGTTGCTTCGCGTTGTGGTG
                        ttgattt  TA-rich tract