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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaacgagcttaatctattagttgatacaacttaagaaagtgagatttctgaacatgttggatcctcaagttttgttttgtttgttttcatgttttttcagGAGCATCAAGTGGTATAGGTGTAGAAACAGCTCGTGTTCTTGCACTGCGTGGTGTGCATGTGGTTATGGCGGTGAGAAACACTGGCGCCGGTGCTAAAGT

Basic information

species Arabidopsis thaliana
transcript AT4G23420.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116404984|gb|EG447576.1|EG447576
EST:     GGAAATCACACATGGTGTTGATGGGACTGGTCTCACTGCCATTGTCACAG                         GAGCATCAAGTGGTATAGGTGTAGAAACAGCTCGTGTTCTTGCACTGCGTG
genomic: GGAAGTCACACATGGTGTTGATGGGACTGGTCTCACTGCCATTGTCACAGgttttcttct ... gttttttcagGAGCATCAAGTGGTATAGGTGTAGAAACAGCTCGTGTTCTTGCACTGCGTG
EST: gi|116404933|gb|EG447525.1|EG447525
EST:     GGAA-TCACACATGGTGTTGATGGGACTGGTCTCACTGCCATTGTCACAG                         GGAGCATCA-GTGGTATAGGTGTAGAAACAGCTCGTGT
genomic: GGAAGTCACACATGGTGTTGATGGGACTGGTCTCACTGCCATTGTCACAGgttttcttct ... gttttttcagG-AGCATCAAGTGGTATAGGTGTAGAAACAGCTCGTGT
EST: gi|86022920|gb|DR318673.1|DR318673
EST:     GGAAGTCACAGATGGTGTTGATGGGACTGGTCTCACTGCCATTGTCACAG                         GAGCATCAAGTGGTATAGGTGTAGAAACAGCTCGTGTTCTTGCACTGCGTG
genomic: GGAAGTCACACATGGTGTTGATGGGACTGGTCTCACTGCCATTGTCACAGgttttcttct ... gttttttcagGAGCATCAAGTGGTATAGGTGTAGAAACAGCTCGTGTTCTTGCACTGCGTG
EST: gi|116404988|gb|EG447580.1|EG447580
EST:     GGAAATCACACATGGTGTTGATGGGACTGGTCTCACTGCCATTGTCACAG                         GAGCATCAAGTGGTATAGGTGTAGAAACAGCTCGTGTTCTTGCACTGCGTG
genomic: GGAAGTCACACATGGTGTTGATGGGACTGGTCTCACTGCCATTGTCACAGgttttcttct ... gttttttcagGAGCATCAAGTGGTATAGGTGTAGAAACAGCTCGTGTTCTTGCACTGCGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgaacatgttggatcctcaagttttgttttgtttgttttcatgttttttcagGAGCATCAAGTGGTATAGGTGTAGAAACAGCTCGTGTTCTTGCACTGCGTGGTGTGCATGTGGTTATGGCGGTGAGAAACACTGGCGCCGGTGCTAAAGT
                                      ttttcatgttttttc  CT-rich tract
                                      ttttcatgtttttt  TA-rich tract