1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aacatttgtgaagatttagatgtttgattgattagaattcttgtgcaaagtctgatggcttcttgatgctaaagagttatgtgtattaattttgatgcagGACACAATGATGGACCTAACGAAACTGAAGCCTCCACAGATCACTTTTTATTGCTCGGCGTTTTCCGTCTTGCTCACACTTCATTTCACGATACAGCTTG
species | Arabidopsis thaliana |
transcript | AT4G21570.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTTCACACTCTCCGAGTCTCATCTTCGCTTCTTCCCTAGCTCTTATCTG GACACAATGATGGACCTAACGAAACTGAAGCCTCCACAGATCACTTTTTATEST: gi|152038554|gb|AV829630.2|AV829630
genomic: TCTTCACACTCTCCGAGTCTCATCTTCGCTTCTTCCCTAGCTCTTATCTGgttagttcct ... tttgatgcagGACACAATGATGGACCTAACGAAACTGAAGCCTCCACAGATCACTTTTTAT
EST: TCTTCACACTCTCCGAGTCTCATCTTCGCTTCTTCCCTAGCTCTTATCTG GACACAATGATGGACCTAACGAAACTGAAGCCTCCACAGATCACTTTTTAT
genomic: TCTTCACACTCTCCGAGTCTCATCTTCGCTTCTTCCCTAGCTCTTATCTGgttagttcct ... tttgatgcagGACACAATGATGGACCTAACGAAACTGAAGCCTCCACAGATCACTTTTTAT
caaagtctgatggcttcttgatgctaaagagttatgtgtattaattttgatgcagGACACAATGATGGACCTAACGAAACTGAAGCCTCCACAGATCACTTTTTATTGCTCGGCGTTTTCCGTCTTGCTCACACTTCATTTCACGATACAGCTTG
ttatgtgtattaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacatttgtgaagatttagatgtttgattgattagaattcttgtgcaaagtctgatggcttcttgatgctaaagagttatgtgtattaattttgatgcagGACACAATGATGGACCTAACGAAACTGAAGCCTCCACAGATCACTTTTTATTGCTCGGCGTTTTCCGTCTTGCTCACACTTCATTTCACGATACAGCTTG
- - - - - - gatttag
- - - - - - - - - - tgtttga
- - - - - - - - - - - - - - - - - - - - - - -caaagtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaaaga