Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgaacaatatgtgtttcgattctctagaaaacttacacaattgtaaattgaattcactagatatctctagtggctgaaaaggagaaagctttaagatttctgggttcttcttcttcttcttcttcttcttcttcttctctgaattgatttttttcagGATGCTAAGCTTGAGATATTCATTACCTTATCTTCTTCTTCAAACAAGGGAATCATCAACTAAGCTCTTCACCAAAAAGCCTAACAATGTTGTG

Basic information

species Arabidopsis thaliana
transcript AT4G21190.1
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttcttcttcttcttcttcttcttcttcttcttctctgaattgatttttttcagGATGCTAAGCTTGAGATATTCATTACCTTATCTTCTTCTTCAAACAAGGGAATCATCAACTAAGCTCTTCACCAAAAAGCCTAACAATGTTGTG
                                       aattgat  putative branch site (score: 4)
       cttcttcttcttcttc  CT-rich tract
                                     tgaattgattttttt  TA-rich tract