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gtatgtacatgcagcaatataatgacatatcaactatttgtgtctttcttggtttcaccattttcttttgcatttatttgaatttgatgttcttcgaacttgctactcttgtttttggtcctatgacagGTGTACTATGGAGCTGACTTGGAAACAAAGAAATTTGGAAGTGGTTTCCCAAAGTATAAACCGGGGTATCCTATAAGTGAAGCAGATCAATACTCTCAAT
species | Arabidopsis thaliana |
transcript | AT4G20400.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGAAGGTGAATATTGGCGGATAGTGGAGCAGGCAACTGATGAAGTAGAG GTGTACTATGGAGCTGACTTGGAAACAAAGAAATTTGGAAGTGGEST: gi|125282488|gb|EL296573.1|EL296573
genomic: TTGAAGGTGAATATTGGCGGATAGTGGAGCAGGCAACTGATGAAGTAGAGgtatgtacat ... cctatgacagGTGTACTATGGAGCTGACTTGGAAACAAAGAAATTTGGAAGTGG
EST: TTGAAGGTGAATATTGGCGGATAGTGGAGCAGGCAACTGATGAAGTAGAG GTGTACTATGGAGCTGACTTGGAAACAAAGAAA
genomic: TTGAAGGTGAATATTGGCGGATAGTGGAGCAGGCAACTGATGAAGTAGAGgtatgtacat ... cctatgacagGTGTACTATGGAGCTGACTTGGAAACAAAGAAA
tatttgaatttgatgttcttcgaacttgctactcttgtttttggtcctatgacagGTGTACTATGGAGCTGACTTGGAAACAAAGAAATTTGGAAGTGGTTTCCCAAAGTATAAACCGGGGTATCCTATAAGTGAAGCAGATCAATACTCTCAAT
atttgat putative branch site (score: 5)
aatttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtacatgcagcaatataatgacatatcaactatttgtgtctttcttggtttcaccattttcttttgcatttatttgaatttgatgttcttcgaacttgctactcttgtttttggtcctatgacagGTGTACTATGGAGCTGACTTGGAAACAAAGAAATTTGGAAGTGGTTTCCCAAAGTATAAACCGGGGTATCCTATAAGTGAAGCAGATCAATACTCTCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA