1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagaacaagctccaaagtttgttcctttttttcaattttcgccaattctgtaatctcatcattgtccttgtttgtttgtttgattcaacacacaattcttgttttgatttggatgcagaagTTTTTGGCTTTGAATTGGATTTGGGTTTCGTTCCAAAATCAGCTCTTTTTGTTAATCAG
species | Arabidopsis thaliana |
transcript | AT4G20380.5 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTCTAGCTTTCGCGGGTTTTGGATTCGATTCCTTACCCTTCTCCAATCGAAGEST: gi|47830281|gb|CK119965.1|CK119965
genomic: GCTCTAGCTTTCGCGGGTTTTGGATTCGATTCCTTACCCTTCTCCAATC---Ggtaagaacaa ... gatgcaga
EST: GCTCTAGATTTCGCGGGTTTTGGATTCGATTCCTTACCCTTCTCCAATCGAAGEST: gi|152037987|gb|BP804959.2|BP804959
genomic: GCTCTAGCTTTCGCGGGTTTTGGATTCGATTCCTTACCCTTCTCCAATC---Ggtaagaacaa ... gatgcaga
EST: GCTCTAGCTTTCGCGGGTTTGGGATTCGATTCCTTACCCTTCTCCAATCG TTTTTGGCTTTGAATTGGATTTGGGTTTCGTTCCAAAATCAGCTCTTTTTG
genomic: GCTCTAGCTTTCGCGGGTTTTGGATTCGATTCCTTACCCTTCTCCAATCGgtaagaacaa ... gatgcagaagTTTTTGGCTTTGAATTGGATTTGGGTTTCGTTCCAAAATCAGCTCTTTTTG
cttgtttgtttgtttgattcaacacacaattcttgttttgatttggatgcagaagTTTTTGGCTTTGAATTGGATTTGGGTTTCGTTCCAAAATCAGCTCTTTTTGTTAATCAG
ttttgat putative branch site (score: 4)
ttttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaacaagctccaaagtttgttcctttttttcaattttcgccaattctgtaatctcatcattgtccttgtttgtttgtttgattcaacacacaattcttgttttgatttggatgcagaagTTTTTGGCTTTGAATTGGATTTGGGTTTCGTTCCAAAATCAGCTCTTTTTGTTAATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC