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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcacctttatcccttatcttcaacaactccagtttcaaaaatttaccatttcataaaattcaaattcagttcttcgttgtgttactggaagTGAAAGTAATGGCGCTCTGTAACTTGAATCCAACTCAAGGGATATTCCCATTGCAAGGCTTATCA

Basic information

species Arabidopsis thaliana
transcript AT4G18975.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116392998|gb|EG435590.1|EG435590
EST:     TGTTCTTGCTGCATCGTATTACTTCCAAATCTGCTCTGTTTTGAGTAAAG                         TGAAAGTAATGGCGCTCTGTAACTTGAATCCAACTCAAGGGATATTCCCAT
genomic: TGTTCTTGCTGCATCGTATTACTTCCAAATCTGCTCTGTTTTGAGTAAAGgtatcacctt ... ttactggaagTGAAAGTAATGGCGCTCTGTAACTTGAATCCAACTCAAGGGATATTCCCAT
EST: gi|116392999|gb|EG435591.1|EG435591
EST:     TGTTCTTGCTGCATCGTATTACTTCCAAATCTGCTCTGTTTTGAGTAAAG                         TGAAAGTAATGGCGCTCTGTAACTTGAATCCAACTCAAGGGATATTCCCAT
genomic: TGTTCTTGCTGCATCGTATTACTTCCAAATCTGCTCTGTTTTGAGTAAAGgtatcacctt ... ttactggaagTGAAAGTAATGGCGCTCTGTAACTTGAATCCAACTCAAGGGATATTCCCAT
EST: gi|116393000|gb|EG435592.1|EG435592
EST:     TGTTCTTGCTGCATCGTATTACTTCCAAATCTGCTCTGTTTTGAGTAAAG                         TGAAAGTAATGGCGCTCTGTAACTTGAATCCAACTCAAGGGATATTCCCAT
genomic: TGTTCTTGCTGCATCGTATTACTTCCAAATCTGCTCTGTTTTGAGTAAAGgtatcacctt ... ttactggaagTGAAAGTAATGGCGCTCTGTAACTTGAATCCAACTCAAGGGATATTCCCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaatttaccatttcataaaattcaaattcagttcttcgttgtgttactggaagTGAAAGTAATGGCGCTCTGTAACTTGAATCCAACTCAAGGGATATTCCCATTGCAAGGCTTATCA
           atttcataaaattcaa  TA-rich tract