1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtacttctcaaagttaaagttatctcctttttgagttttagggtacttgaaattgtttctaattgagtcaatttgcttgttttagGCATAAGACAAGATTATATATTGGACAGTTAGTGAAAGATACATCAGCTAAACTTAAAGAAGCTAGTGAAACTGATCATCAAAGAGGTGTAAAT
species | Arabidopsis thaliana |
transcript | AT4G17730.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTCAATACTCTTGGTACTCCTAAAGATACGCCTGAGCTCAGAGAGAAGCT GCATAAGACAAGATTATATATTGGACAGTTAGTGAAAGATACATCAGCTAAEST: gi|86052110|gb|DR347867.1|DR347867
genomic: GTCAATACTCTTGGTACTCCTAAAGATACGCCTGAGCTCAGAGAGAAGCTgtaagtactt ... cttgttttagGCATAAGACAAGATTATATATTGGACAGTTAGTGAAAGATACATCAGCTAA
EST: GTCAATACTCTTGGTACTCCTAAAGATACGCCTGAGCTCAGAGAGAAGCT GCATAAGACAAGATTATATATTGGACAGTTAGTGAAAGATACATCAGCTAAEST: gi|86052114|gb|DR347871.1|DR347871
genomic: GTCAATACTCTTGGTACTCCTAAAGATACGCCTGAGCTCAGAGAGAAGCTgtaagtactt ... cttgttttagGCATAAGACAAGATTATATATTGGACAGTTAGTGAAAGATACATCAGCTAA
EST: GTCAATACTCTTGGTACTCCTAAAGATACGCCTGAGCTCAGAGAGAAGCT GCATAAGACAAGATTATATATTGGACAGTTAGTGAAAGATACATCAGCTAAEST: gi|86052113|gb|DR347870.1|DR347870
genomic: GTCAATACTCTTGGTACTCCTAAAGATACGCCTGAGCTCAGAGAGAAGCTgtaagtactt ... cttgttttagGCATAAGACAAGATTATATATTGGACAGTTAGTGAAAGATACATCAGCTAA
EST: GTCAATACTCTTGGTACTCCTAAAGATACGCCTGAGCTCAGAGAGAAGCT GCATAAGACAAGATTATATATTGGACAGTTAGTGAAAGATACATCAGCTAAEST: gi|86052109|gb|DR347866.1|DR347866
genomic: GTCAATACTCTTGGTACTCCTAAAGATACGCCTGAGCTCAGAGAGAAGCTgtaagtactt ... cttgttttagGCATAAGACAAGATTATATATTGGACAGTTAGTGAAAGATACATCAGCTAA
EST: GTCAATACTCTTGGTACTCCTAAAGATACGCCTGAGCTCAGAGAGAAGCT GCATAAGACAAGATTATATATTGGACAGTTAGTGAAAGATACATCAGCTAAEST: gi|86052108|gb|DR347865.1|DR347865
genomic: GTCAATACTCTTGGTACTCCTAAAGATACGCCTGAGCTCAGAGAGAAGCTgtaagtactt ... cttgttttagGCATAAGACAAGATTATATATTGGACAGTTAGTGAAAGATACATCAGCTAA
EST: GTCAATACTCTTGGTACTCCTAAAGATACGCCTGAGCTCAGAGAGAAGCT GCATAAGACAAGATTATATATTGGGACAGTTAGTGAAAGATACATCAGCTA
genomic: GTCAATACTCTTGGTACTCCTAAAGATACGCCTGAGCTCAGAGAGAAGCTgtaagtactt ... cttgttttagGCATAAGACAAGATTATATATTGG-ACAGTTAGTGAAAGATACATCAGCTA
ttgagttttagggtacttgaaattgtttctaattgagtcaatttgcttgttttagGCATAAGACAAGATTATATATTGGACAGTTAGTGAAAGATACATCAGCTAAACTTAAAGAAGCTAGTGAAACTGATCATCAAAGAGGTGTAAAT
ttctaat putative branch site (score: 2)
cttgtttt putative PPT
aaattgtttctaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtacttctcaaagttaaagttatctcctttttgagttttagggtacttgaaattgtttctaattgagtcaatttgcttgttttagGCATAAGACAAGATTATATATTGGACAGTTAGTGAAAGATACATCAGCTAAACTTAAAGAAGCTAGTGAAACTGATCATCAAAGAGGTGTAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG