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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttctcactattatctctctctcagatgtcgtttctgtattgttcattagattctagaagttaattaaggatgaaatgtgatttttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGAGGTTTCTTCAGAGGGTTAGGTGTTGGGAGTATCGCCAGCAGCCTTC

Basic information

species Arabidopsis thaliana
transcript AT4G17390.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G17390.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: LOC_Os03g40180.1 (Oryza sativa), 3'ss of exon 1
----gtatgtttctcactattatctctctct-cagatgtcgtttc---tgtattgttcattagattctagaagttaattaagg-atgaaatgtgatttt--tgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGAGGTTTCTTCAGAGGGTTAGGTGTTGGGAGTATCGCCAGCAGCCTTC
    |    |    |        ||| |||      | |||| ||   | |      | |     || |    |    | |    |     ||  ||||  ||   |||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||  | ||| | ||  |||| ||||||||  | ||||||||  |
gtgagctcctcctccgacgccgcctccctccatcactctcgtctccagtttcccacccctccacctccatctctctcctgatccgtcctccgtcgttttgctgtgcacagGTGCGTACAAGTACGTGTCGGAGCTATGGAGGAGGAAGCAGTCGGACGTGATGAGGTTCGTGCAGCGCGTGCGGTGCTGGGAGTACAGGCAGCAGCCGGC

upper sequence: AT4G17390.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: LOC_Os05g19370.1 (Oryza sativa), 3'ss of exon 1
gtatgtttctcactattatctctctctcagatgtcgtttctgtattgttcattagattctagaagttaattaaggatgaaatgtgatttttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGAGGTTTCTTCAGAGGGTTAGGTGTTGGGAGTATCGCCAGCAGCCTTC
||  | | |||    |  ||   || |     ||||         |     |    | ||      | ||    |      | |   |      | |||| |||||||| |||||||||||||||||||||| |||||||||||| |||||||||||  | ||| | ||  | || |||||||| |||||||||||  |
gtgagctcctcctcctcctccgcctgttcctcgtcgacctccccctacatctc---tcctctcttctgat--gcgcccggtttttgctgcgaggtgcagGGGCGTACAAGTACGTGTCGGAGCTATGGAGGAGGAAGCAGTCGGACGTGATGAGGTTCGTGCAGCGCGTGCGCTGCTGGGAGTACCGCCAGCAGCCGGC

upper sequence: AT4G17390.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GRMZM2G034794_T02 (Zea mays), 3'ss of exon 1
gtatgtttctcactattatctctctctcagatgtcgtttctgtattgttcattagattctagaagttaattaaggatgaaatgtgatttttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGAGGTTTCTTCAGAGGGTTAGGTGTTGGGAGTATCGCCAGCAGCCTTC
            || |  | | |  | | |||| | | || |  | |       |  |||    ||   |   | || |  | ||    |     |||||||||||||| ||||| |||||||||||| ||| ||||||||| ||||||||| ||||  | ||| | ||  | || ||||||||  | ||||||||  |
-------gtgagctctcgtatttaccgctgatggcctctccgattcgcatgcgtgggtcttaccgtgtgtc--gtatcattt-tgtcgctgtggcacagGTGCGTACAAGTACGTCTCGGAGCTATGGCGGAGGAAGCAGTCCGATGTGATGCGGTTCGTGCAGCGCGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGC

upper sequence: AT4G17390.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GRMZM2G024354_T01 (Zea mays), 3'ss of exon 1
gtatgtttctcactattatctctctctcagatgtcgtttctgtattgttcattagattctagaagttaattaaggatgaaatgtgatttttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGAGGTTTCTTCAGAGGGTTAGGTGTTGGGAGTATCGCCAGCAGCCTTC
               | | |      || |  ||| | || ||   |   |     | |  |  ||   |    |||  | | || |  | |    |||| |||||||| ||||||||||| |||||||||| |||||||||||| |||||| | ||  | ||| | ||  | || ||||||||  | |||||||| ||
--------------gtgagcaaatgttctgtggtc-tctccgtgcaggcgaacctttgcgcgtcgtctctctctgat--agtctgttcgtcg--cgcagGGGCGTACAAGTACGTGTCGGAACTATGGAGGAGGAAGCAGTCGGACGTGATGCGCTTCGTGCAGCGCGTGCGCTGCTGGGAGTACAGGCAGCAGCCGTC

upper sequence: AT4G17390.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA17G15230.1 (Glycine max), 3'ss of exon 1
gtatgtttctcactattatctct-ctctcagatgtcgtttctgtattgttcattagattctagaagttaattaaggatgaaatgtgatttttgatt-----acagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGAGGTTTCTTCAGAGGGTTAGGTGTTGGGAGTATCGCCAGCAGCCTTC
   || |  |  ||||||  | | ||    ||  |   |    ||   ||  |   |||||||     ||||| | || |  |||| |  || ||      | |||||| ||||| || || |||||||||||| | ||||||||||| ||||| ||||| ||  | ||| |||| ||||| ||||||||||||||||| |||||
---tgctgatttctattagttatgctggttgagctttctatcatagcatttttgttattctagtga--aattaggcattatttgtgttggtttatgttgcaatagGTGCCTACAAGTATGTTTCGGAGCTATGGCGCAAGAAGCAGTCTGATGTTATGAGATTCTTGCAGCGGGTGAGGTGCTGGGAGTATCGCCAGCAACCTTC

upper sequence: AT4G17390.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA05G04870.1 (Glycine max), 3'ss of exon 1
gtatgtttctcactattatctctctctcagatgtcgtttctgtattgttcattagattctagaagttaattaaggatgaaat-gtgatttttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGAGGTTTCTTCAGAGGGTTAGGTGTTGGGAGTATCGCCAGCAGCCTTC
|  | | | |||      | |  || |   |      ||  | ||||||  ||      |    |  |||| |  ||   || |  || | |    | |||||| ||||| || || |||||||||||| | ||||||||||| ||||| ||||| ||  | ||| |||| ||||| |||||||| |||||||| |||||
gcctttctttcatagcatttttgctattcaagtgaaattaggcattgtttgttttggaatgagtgaaaattgattattttattggaatatgttgcaatagGTGCTTACAAGTATGTTTCGGAGCTATGGCGCAAGAAGCAGTCTGATGTTATGAGATTCTTGCAGCGGGTGAGGTGCTGGGAGTACCGCCAGCAACCTTC

upper sequence: AT4G17390.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv16s0013g02020.t01 (Vitis vinifera), 3'ss of exon 1
-------gtatgtttctcactattatctctctctcagatgtcgtttctgtatt---gttcattagattctagaagttaattaaggatgaaatgtgatttttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGAGGTTTCTTCAGAGGGTTAGGTGTTGGGAGTATCGCCAGCAGCCTTC
         | | ||  |   | | ||| | ||||   |  |       ||||   |||       || | |       |||  |    | |||   |  ||     ||| || ||||| ||||||||||||||||||||||||||||| || ||||||||||||||  | |||||||| ||||| ||||||||||||||||| |||||
gtaagcaccaagctttccttcactctctttttctctacttccaagcggatattagggttttccgatttgtggcttcctgttattggc--attgttcgtggtggcattagGGGCTTACAAGTACGTGTCGGAGCTATGGAGGAAGAAGCAATCCGATGTGATGAGGTTCTTGCAGAGGGTGAGGTGCTGGGAGTATCGCCAGCACCCTTC

upper sequence: AT4G17390.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv15s0021g02480.t01 (Vitis vinifera), 3'ss of exon 1
-gtatgtttctcactattatctctctctcagatgtcgt-ttctgtattgttcattagattctagaagttaattaaggatgaaatgtgatttt--tgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGAGGTTTCTTCAGAGGGTTAGGTGTTGGGAGTATCGCCAGCAGCCTTC
 |||  ||          |  | |   | || | |  | || | | ||  |  ||| ||| |  |  | | || ||| |    |  | ||||  ||||  |||| || ||||  || || || ||  ||||||| ||||||||||| ||||| ||||||||||| |||||||| ||||| |||||||||||||| || |||||
tgtaaattaactgaatgaaagtgttattaagttattttattttatttttatttttaaattttttatttgagttgaggtt---tttcggttttggtgatgtcagGGGCTTACATGTATGTTTCTGAATTATGGAGAAAGAAGCAGTCCGATGTTATGAGGTTTCTGCAGAGGGTCAGGTGCTGGGAGTATCGCCAACACCCTTC

upper sequence: AT4G17390.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv00s0551g00020.t01 (Vitis vinifera), 3'ss of exon 1
----gtatgtt-tctcactattatctctctctcagatgtcgtttctgtattgttcattagattctagaagttaattaaggatgaaatgtgatttttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGAGGTTTCTTCAGAGGGTTAGGTGTTGGGAGTATCGCCAGCAGCCTTC
     |||| | |  || |  | |   |  |   |  ||  ||  || |   | ||||  |||        || |  | | ||   ||| ||||    | | ||| || |||||||||||||| ||  |||||||||||||||| || || ||||||||||| || ||||||||||||||||||||||| || || || || ||
cttaatatgctgtgacagtgctttgaattacattggggt-attaatggaggttccattgtatttggagtagtagt--aagttgtggtgt-atttggtttaatagGGGCTTACAAATACGTGTCCGAATTATGGAGGAAGAAGCAATCAGACGTGATGAGGTTCCTGCAGAGGGTTAGGTGTTGGGAGTACCGTCAACATCCGTC

upper sequence: AT4G17390.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: PP1S152_141V6.1 (Physcomitrella patens), 3'ss of exon 1
-----------------------------------------------------------------gtatgtttctcactattatctctctctcagatgtcgtttctgtattgttcattagatt---ctagaagttaattaaggatgaaatgtgatttttga------ttacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGAGGTTTCTTCAGAGGGTTAGGTGTTGGGAGTATCGCCAGCAGCCTTC
                                                                  | | ||| | | | || || || ||     ||  ||||  | | |||     ||||    || ||  ||  ||     |    | |  ||||| |       | ||||||||||||| ||| |   |||||| ||||||||||||||||| |||||| || | ||  | | | | ||  | || ||||||||  | ||||  ||   
gtattcattcccagctccctctctctctagcgctgcgtagctgcgtagctgcgtttttttattttttttattttttatttttttccctttccttt-tgaggtttgcgcagtgtgatcgagatctaactggagttttttttttttttttttttttttttttaaatttcctccagGTGCGTACAAGTACATCGAGGAGCTGTGGAGGAAGAAGCAGTCTGATGTGCTGCGTTTCTTGCTGCGTGTGCGCTGCTGGGAGTACAGGCAGCTCCCCGG

upper sequence: AT4G17390.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: PP1S68_114V6.1 (Physcomitrella patens), 3'ss of exon 1
----gtatgtttctcactattatctctctctcagatgtcgtttctg-tattgttcattagattctagaagttaattaaggatgaaatgtgatttttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGAGGTTTCTTCAGAGGGTTAGGTGTTGGGAGTATCGCCAGCAGCCTTC
    || || |  |   | | ||   |   |   ||| | |||  | | |||   |   |    || | |    || | |   ||   |||| ||    | |||| |||||||| ||| |    ||||||||||||||||||||||| |||||| || | || ||   | | ||  | || ||||||||  | ||||  ||   
ggttgt-tggtagtgtttttgattgttgattggaatgacatttagggttttgggaaacggtggttacatgcatgtttatgtcaaa---tgatcttgttctgcagGCGCGTACAAGTACATTGAAGAGCTATGGAGGAAGAAGCAGTCTGATGTGCTGCGATTCCTATTGCGTGTGCGATGCTGGGAGTACAGGCAGCTCCCAGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86021787|gb|DR317540.1|DR317540
EST:     GTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: GTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|164005909|gb|ES110683.1|ES110683
EST:     GACTAGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGA
genomic: GACT-GCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGA
EST: gi|86021781|gb|DR317534.1|DR317534
EST:     GTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: GTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|124990602|gb|EL062871.1|EL062871
EST:     GTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCGGTCGGA
genomic: GTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGA
EST: gi|116413476|gb|EG456068.1|EG456068
EST:     GACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: GACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|47828590|gb|CK118274.1|CK118274
EST:     AAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: AAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|152033817|gb|BP816755.2|BP816755
EST:     ACGCCGGAAAATCGCAATGG                         GTGCGTAAAAATACGTGTGGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: ACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|164232984|gb|ES053256.1|ES053256
EST:     GACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGA
genomic: GACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGA
EST: gi|124926140|gb|EL004031.1|EL004031
EST:     TGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTG
genomic: TGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTG
EST: gi|86021792|gb|DR317545.1|DR317545
EST:     ACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: ACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|116413469|gb|EG456061.1|EG456061
EST:     GACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: GACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|116413465|gb|EG456057.1|EG456057
EST:     GACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: GACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|164133453|gb|ES058224.1|ES058224
EST:     AGTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAG
genomic: AGTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAG
EST: gi|125241252|gb|EL255337.1|EL255337
EST:     GACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGG
genomic: GACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGG
EST: gi|86021793|gb|DR317546.1|DR317546
EST:     AAGTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: AAGTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|116413464|gb|EG456056.1|EG456056
EST:     GACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: GACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|86021791|gb|DR317544.1|DR317544
EST:     GTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: GTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|125025364|gb|EL097633.1|EL097633
EST:     CCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: CCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|116413474|gb|EG456066.1|EG456066
EST:     GACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: GACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|86021794|gb|DR317547.1|DR317547
EST:     AAGTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: AAGTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|47830178|gb|CK119862.1|CK119862
EST:     CGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: CGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|86021780|gb|DR317533.1|DR317533
EST:     AGTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: AGTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|116413466|gb|EG456058.1|EG456058
EST:     AAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: AAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|164038433|gb|ES090630.1|ES090630
EST:     GTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGA
genomic: GTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGA
EST: gi|116413470|gb|EG456062.1|EG456062
EST:     GACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACTAATACGTGTCGGAGCTATGGAGGAAGAAGCAGCCGGATGTGA
genomic: GACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|164024024|gb|ES017996.1|ES017996
EST:     ACTGCGACGCCGG-AAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGA
genomic: ACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGA
EST: gi|86021784|gb|DR317537.1|DR317537
EST:     GTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: GTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|47829380|gb|CK119064.1|CK119064
EST:     GGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: GGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|86021782|gb|DR317535.1|DR317535
EST:     AAGTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: AAGTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|164227498|gb|EL985105.1|EL985105
EST:     GTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGG
genomic: GTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGG
EST: gi|116413473|gb|EG456065.1|EG456065
EST:     GACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: GACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|125299567|gb|EL313652.1|EL313652
EST:     GTGACTGCGACGCCGGAAAATCGC-ATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGA
genomic: GTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGA
EST: gi|116413460|gb|EG456052.1|EG456052
EST:     GACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: GACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|86021779|gb|DR317532.1|DR317532
EST:     AAGTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: AAGTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|86021783|gb|DR317536.1|DR317536
EST:     ACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: ACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|164005389|gb|ES086923.1|ES086923
EST:     GACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGNGGAAGAAGCAGTCGGA
genomic: GACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGA
EST: gi|124902830|gb|EH976910.1|EH976910
EST:     AGTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: AGTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|86021795|gb|DR317548.1|DR317548
EST:     ACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: ACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|125325417|gb|EL339497.1|EL339497
EST:     TGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGG
genomic: TGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGG
EST: gi|86021786|gb|DR317539.1|DR317539
EST:     GTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: GTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|86021788|gb|DR317541.1|DR317541
EST:     AAACCTAATTCGAAGAAAGAAGTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: AAACCTAATTCGAAGAAAGAAGTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|124715373|gb|EH806775.1|EH806775
EST:     GTGACTTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGA
genomic: GTGAC-TGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGA
EST: gi|125195028|gb|EL209982.1|EL209982
EST:     CGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: CGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|152033886|gb|BP819048.2|BP819048
EST:     ACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: ACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|164021757|gb|ES074291.1|ES074291
EST:     ACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAG-AAGAAGCAGTCGGA
genomic: ACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGA
EST: gi|86021785|gb|DR317538.1|DR317538
EST:     GTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: GTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|86021790|gb|DR317543.1|DR317543
EST:     GTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
genomic: GTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGA
EST: gi|164067032|gb|ES135771.1|ES135771
EST:     GTGACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAG
genomic: GTGACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAG
EST: gi|164105227|gb|ES166382.1|ES166382
EST:     GACTGCGACGCCGGAAAATCGCAATGG                         GTGCGTACAAATACGTGTCGGAGCTATGGAGGTAGAAGCAGTCGGA
genomic: GACTGCGACGCCGGAAAATCGCAATGGgtatgtttct ... ttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttcattagattctagaagttaattaaggatgaaatgtgatttttgattacagGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGAGGTTTCTTCAGAGGGTTAGGTGTTGGGAGTATCGCCAGCAGCCTTC
                                           ttttgat  putative branch site (score: 4)
                                          ttttt  CT-rich tract
               tagaagttaattaa  TA-rich tract