1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atagttggcttaaatccgtttaatcttataaaaccggactacgtactagtactaggtaatgttttgagagcttttgctttatttgattgtgttaatttagGAACGGGGCGAGACAAACCGGACTACTTGGCAACGGTGGATGTGGATCCAAGCTCACCCACATTTTCAAGCGTCATTCACAGACTAAAAATGCCATATAT
species | Arabidopsis thaliana |
transcript | AT4G14040.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTATGTCACTGCCCTTTACTCCG GAACGGGGCGAGACAAACCGGACTACTTGGCAACGGTGGATGTGGATCCAA
genomic: TCTATGTCACTGCCCTTTACTCCGgtaaacattt ... gttaatttagGAACGGGGCGAGACAAACCGGACTACTTGGCAACGGTGGATGTGGATCCAA
ctagtactaggtaatgttttgagagcttttgctttatttgattgtgttaatttagGAACGGGGCGAGACAAACCGGACTACTTGGCAACGGTGGATGTGGATCCAAGCTCACCCACATTTTCAAGCGTCATTCACAGACTAAAAATGCCATATAT
tgttaat putative branch site (score: 3)
tttatttgattgtgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atagttggcttaaatccgtttaatcttataaaaccggactacgtactagtactaggtaatgttttgagagcttttgctttatttgattgtgttaatttagGAACGGGGCGAGACAAACCGGACTACTTGGCAACGGTGGATGTGGATCCAAGCTCACCCACATTTTCAAGCGTCATTCACAGACTAAAAATGCCATATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - taaatcc
- - - - - - - - - - - - - - taaaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttttg