1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aatatgcataagtttgaggttgattttagttgaaagtgttgggagaatgtttatttttttgatggtttctgttgtggatttggtttcctctatgtgatagGAAGCTCTGTTGAAATTAGGATTCTATTCGGGCGAAGAGGATATGGAGTTCTCGAGCTTTTCAAGTGGGACTGCAAGTGCTGTTAAGACTTGGCAA
species | Arabidopsis thaliana |
transcript | AT4G13670.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGAGGATATTGAAAGTTGGAAGCGAAGGCGACGATGTTCAAGCTTTGCAG GAAGCTCTGTTGAAATTAGGATTCTATTCGGGCGAAGAGGATATGGAGTTEST: gi|124860983|gb|EH945420.1|EH945420
genomic: GGAGGATATTGAAAGTTGGAAGCGAAGGCGACGATGTTCAAGCTTTGCAGgtctgctctc ... tatgtgatagGAAGCTCTGTTGAAATTAGGATTCTATTCGGGCGAAGAGGATATGGAGTT
EST: GTTCAAGCTTTGCAG GAAGCTCTGTTGAAATTAGGATTCTATTCGGGCGAAGAGGATATGGAGTTCEST: gi|164173685|gb|ES028906.1|ES028906
genomic: GTTCAAGCTTTGCAGgtctgctctc ... tatgtgatagGAAGCTCTGTTGAAATTAGGATTCTATTCGGGCGAAGAGGATATGGAGTTC
EST: AGCGAAGGCGACGATGTTCAAGCTTTGCAG GAAGCTCTGTTGAAATTAGGATTCTATTCGGGCGAAGAGGATATGGAGTTC
genomic: AGCGAAGGCGACGATGTTCAAGCTTTGCAGgtctgctctc ... tatgtgatagGAAGCTCTGTTGAAATTAGGATTCTATTCGGGCGAAGAGGATATGGAGTTC
aatgtttatttttttgatggtttctgttgtggatttggtttcctctatgtgatagGAAGCTCTGTTGAAATTAGGATTCTATTCGGGCGAAGAGGATATGGAGTTCTCGAGCTTTTCAAGTGGGACTGCAAGTGCTGTTAAGACTTGGCAA
ttttgat putative branch site (score: 4)
tttcctctat putative PPT
ttatttttttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatatgcataagtttgaggttgattttagttgaaagtgttgggagaatgtttatttttttgatggtttctgttgtggatttggtttcctctatgtgatagGAAGCTCTGTTGAAATTAGGATTCTATTCGGGCGAAGAGGATATGGAGTTCTCGAGCTTTTCAAGTGGGACTGCAAGTGCTGTTAAGACTTGGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - agtttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatttgg