1 5' 3' | 2 5' 3' | 3 5' 3' |
...taataatattgactgtcttagcttatgttcggtggtgcttacactaaaaaattaaaatatttcagtgaaactacttacaataagttaaaaaatatttcagCGTTTCTTACCATCAGAATTTGGAATGGATCCGTCACGTATGGGACATGCCATGCCACCAGGAAGTGAAACATTTGATCAAAAAATGGAAATACGAAATG
species | Arabidopsis thaliana |
transcript | AT4G13660.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGTTCAGCTCAAGCTCGTCGCAGCCATCAAAGAGGCCGGTAACGTCAAG CGTTTCTTACCATCAGAATTTGGAATGGATCCGTCACGTATGGGACATGCCEST: gi|86079375|gb|DR375132.1|DR375132
genomic: CCGTTCAGCTCAAGCTCGTCGCAGCCATCAAAGAGGCCGGTAACGTCAAGgtaaaaggac ... aatatttcagCGTTTCTTACCATCAGAATTTGGAATGGATCCGTCACGTATGGGACATGCC
EST: CCGTTCAGCTCAAGCTCGTCGCAGCCATCAAAGAGGCCGGTAACGTCAAG CGTTTCTTACCATCAGAATTTGGAATGGATCCGTCACGTATGGGACATGCC
genomic: CCGTTCAGCTCAAGCTCGTCGCAGCCATCAAAGAGGCCGGTAACGTCAAGgtaaaaggac ... aatatttcagCGTTTCTTACCATCAGAATTTGGAATGGATCCGTCACGTATGGGACATGCC
aaaaaattaaaatatttcagtgaaactacttacaataagttaaaaaatatttcagCGTTTCTTACCATCAGAATTTGGAATGGATCCGTCACGTATGGGACATGCCATGCCACCAGGAAGTGAAACATTTGATCAAAAAATGGAAATACGAAATG
tacttac putative branch site (score: 1)
aaactacttacaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taataatattgactgtcttagcttatgttcggtggtgcttacactaaaaaattaaaatatttcagtgaaactacttacaataagttaaaaaatatttcagCGTTTCTTACCATCAGAATTTGGAATGGATCCGTCACGTATGGGACATGCCATGCCACCAGGAAGTGAAACATTTGATCAAAAAATGGAAATACGAAATG
- - - - - - - - - - - - - - - - - - - - acactaa
- - - - - - - - - - - - - - - - - - - - - - - - - attaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaataa