1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgacccttttgaatttttgtttcttgggtttgataaagtaagaaccttttagtgtttactgaattcaaaatcatttttttaaaaggaattggctttgaaatagttggatgtaacaaatgattgctaggctcagatataattataagaagcttcattatgatgttacagATATGGATATAAAGTATAAAAGCTTTCTTGATGAATGGGAATCTGATCCGAGAGTGAAATGTGTTATCGTTGAAGGAAGCACATCTAGGGCCTTTTGTGC
species | Arabidopsis thaliana |
transcript | AT4G13360.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGAACCAAAGCTCTCAACGCCATGAATTTAG ATATGGATATAAAGTATAAAAGCTTTCTTGATGAATGGGAATCTGATCCGAEST: gi|301502043|gb|HO207583.1|HO207583
genomic: CGAACCAAAGCTCTCAACGCCATGAATTTAGgtgacccttt ... gatgttacagATATGGATATAAAGTATAAAAGCTTTCTTGATGAATGGGAATCTGATCCGA
EST: CGCTCTCATCACTCTCGATCGAACCAAAGCTCTCAACGCCATGAATTTAG ATATGGATATAAAGTATAAAAGCTTTCTTGATGAATGGGAATCTGATCCGA
genomic: CGCTCTCATCACTCTCGATCGAACCAAAGCTCTCAACGCCATGAATTTAGgtgacccttt ... gatgttacagATATGGATATAAAGTATAAAAGCTTTCTTGATGAATGGGAATCTGATCCGA
caaatgattgctaggctcagatataattataagaagcttcattatgatgttacagATATGGATATAAAGTATAAAAGCTTTCTTGATGAATGGGAATCTGATCCGAGAGTGAAATGTGTTATCGTTGAAGGAAGCACATCTAGGGCCTTTTGTGC
agatataattataaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgacccttttgaatttttgtttcttgggtttgataaagtaagaaccttttagtgtttactgaattcaaaatcatttttttaaaaggaattggctttgaaatagttggatgtaacaaatgattgctaggctcagatataattataagaagcttcattatgatgttacagATATGGATATAAAGTATAAAAGCTTTCTTGATGAATGGGAATCTGATCCGAGAGTGAAATGTGTTATCGTTGAAGGAAGCACATCTAGGGCCTTTTGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA