1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttcctctgtggatttttagtttttatactctaatccactaaaagattgctccttgagagtttccttacttcttaaaatcatttttatgacttgtcttcagGTCAGGTGGGTGGGGAAGAAGTTGATAGCAAGATTTTACCTTATTGTAGCATCAACAAGAATGAGAAGAGAACTATCGGTGAAATGGAACAAGAGTTCCT
species | Arabidopsis thaliana |
transcript | AT4G11960.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAGACGAAGACTTACCTTATTGCCCCTTAAAGCTTCTACTGATCAATCAG GTCAGGTGGGTGGGGAAGAAGTTGATAGCAAGATTTTACCTTATTGTAGCAEST: gi|19877739|gb|AU238570.1|AU238570
genomic: CAGACGAAGACTTACCTTATTGCCCCTTAAAGCTTCTACTGATCAATCAGgtctcgattt ... ttgtcttcagGTCAGGTGGGTGGGGAAGAAGTTGATAGCAAGATTTTACCTTATTGTAGCA
EST: CAGACGAAGACTTACCTTATTGCCCCTTAAAGCTTCTACTGATCAATCAG GTCAGGTGGGTGGGGAAGAAGTTGATAGCAAGATTTTACCTTATTGTAGCAEST: gi|47831512|gb|CK121196.1|CK121196
genomic: CAGACGAAGACTTACCTTATTGCCCCTTAAAGCTTCTACTGATCAATCAGgtctcgattt ... ttgtcttcagGTCAGGTGGGTGGGGAAGAAGTTGATAGCAAGATTTTACCTTATTGTAGCA
EST: CAGACGAAGACTTACCTTATTGCCCCTTAAAGCTTCTACTGATCAATCAG GTCAGGTGGGTGGGGAAGAAGTTGATAGCAAGATTTTACCTTATTGTAGCAEST: gi|116378739|gb|EG421331.1|EG421331
genomic: CAGACGAAGACTTACCTTATTGCCCCTTAAAGCTTCTACTGATCAATCAGgtctcgattt ... ttgtcttcagGTCAGGTGGGTGGGGAAGAAGTTGATAGCAAGATTTTACCTTATTGTAGCA
EST: CAGACGAAGACTTACCTTATTGCCCCTTAAAGCTTCTACTGATCAATCAG GTCAGGTGGGTGGGGAAGAAGTTGATAGCAAGATTTTACCTTATTGTAGCA
genomic: CAGACGAAGACTTACCTTATTGCCCCTTAAAGCTTCTACTGATCAATCAGgtctcgattt ... ttgtcttcagGTCAGGTGGGTGGGGAAGAAGTTGATAGCAAGATTTTACCTTATTGTAGCA
ttgctccttgagagtttccttacttcttaaaatcatttttatgacttgtcttcagGTCAGGTGGGTGGGGAAGAAGTTGATAGCAAGATTTTACCTTATTGTAGCATCAACAAGAATGAGAAGAGAACTATCGGTGAAATGGAACAAGAGTTCCT
tccttac putative branch site (score: 2)
cttgtcttc putative PPT
ttacttcttaaaatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcctctgtggatttttagtttttatactctaatccactaaaagattgctccttgagagtttccttacttcttaaaatcatttttatgacttgtcttcagGTCAGGTGGGTGGGGAAGAAGTTGATAGCAAGATTTTACCTTATTGTAGCATCAACAAGAATGAGAAGAGAACTATCGGTGAAATGGAACAAGAGTTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- cctctgt
- - - - - - - - - - - - - actctaa
- - - - - - - - - - - - - - - - - -cactaaa
- - - - - - - - - - - - - - - - - - - - - - -ttgctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaatca