1 5' 3' | 2 5' 3' | 3 5' 3' |
...atgttttattttagccatgcattaatcatatagtatatgcgaaaacgtatatttttctatatagatagctaaattagtatgtatatatcggtgttgacagGGTTGTGATGGTTCCATCTTGATCAACGCGACATCGAGCAACCAACAAGTGGAGAAGCTTGCTCCTCCGAATCTAACTGTGAGAGGTTTCGATTTTATCG
species | Arabidopsis thaliana |
transcript | AT4G11290.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTTGGCTGCTGGCCTAATTAGGATGCATTTTCATGACTGCTTCGTTCGG GGTTGTGATGGTTCGATCTTAATCAACGCGACATCGAGCAACCAACAAGTGEST: gi|86045039|gb|DR340794.1|DR340794
genomic: CTTTGGCTGCTGGCCTAATTAGGATGCATTTTCATGACTGCTTCGTTCGGgtattcttct ... gtgttgacagGGTTGTGATGGTTCCATCTTGATCAACGCGACATCGAGCAACCAACAAGTG
EST: CTTTGGCTGCTGGCCTAATTAGGATGCATTTTCATGACTGCTTCGTTCGG GGTTGTGATGGTTCGATCTTAATCAACGCGACATCGAGCAACCARCAAGTGEST: gi|86045038|gb|DR340793.1|DR340793
genomic: CTTTGGCTGCTGGCCTAATTAGGATGCATTTTCATGACTGCTTCGTTCGGgtattcttct ... gtgttgacagGGTTGTGATGGTTCCATCTTGATCAACGCGACATCGAGCAACCAACAAGTG
EST: CTTTGGCTGCTGGCCTAATTAGGATGCATTTTCATGACTGCTTCGTTCGG GGTTGTGATGGTTCCATCTTGATCAACGCGACATCGAGCAACCAACAAGTGEST: gi|86045043|gb|DR340798.1|DR340798
genomic: CTTTGGCTGCTGGCCTAATTAGGATGCATTTTCATGACTGCTTCGTTCGGgtattcttct ... gtgttgacagGGTTGTGATGGTTCCATCTTGATCAACGCGACATCGAGCAACCAACAAGTG
EST: CTTTGGCTGCTGGCCTAATTAGGATGCATTTTCATGACTGCTTCGTTCGG GGTTGTGATGGTTCGATCTTAATCAACGCGACATCGAGCAACCAACAAGTGEST: gi|86045040|gb|DR340795.1|DR340795
genomic: CTTTGGCTGCTGGCCTAATTAGGATGCATTTTCATGACTGCTTCGTTCGGgtattcttct ... gtgttgacagGGTTGTGATGGTTCCATCTTGATCAACGCGACATCGAGCAACCAACAAGTG
EST: CTTTGGCTGCTGGCCTAATTAGGATGCATTTTCATGACTGCTTCGTTCGG GGTTGTGATGGTTCGATCTTAATCAACGCGACATCGAGCAACCAACAAGTGEST: gi|86045042|gb|DR340797.1|DR340797
genomic: CTTTGGCTGCTGGCCTAATTAGGATGCATTTTCATGACTGCTTCGTTCGGgtattcttct ... gtgttgacagGGTTGTGATGGTTCCATCTTGATCAACGCGACATCGAGCAACCAACAAGTG
EST: CTTTGGCTGCTGGCCTAATTAGGATGCATTTTCATRACTGCTTCGTTCGG GGTTGTGATGGTTCCATCTTTGATCAACGCGACATCGNGCA-CCAACAAGT
genomic: CTTTGGCTGCTGGCCTAATTAGGATGCATTTTCATGACTGCTTCGTTCGGgtattcttct ... gtgttgacagGGTTGTGATGGTTCCATCTT-GATCAACGCGACATCGAGCAACCAACAAGT
cgtatatttttctatatagatagctaaattagtatgtatatatcggtgttgacagGGTTGTGATGGTTCCATCTTGATCAACGCGACATCGAGCAACCAACAAGTGGAGAAGCTTGCTCCTCCGAATCTAACTGTGAGAGGTTTCGATTTTATCG
agctaaa putative branch site (score: 3)
taaattagtatgtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgttttattttagccatgcattaatcatatagtatatgcgaaaacgtatatttttctatatagatagctaaattagtatgtatatatcggtgttgacagGGTTGTGATGGTTCCATCTTGATCAACGCGACATCGAGCAACCAACAAGTGGAGAAGCTTGCTCCTCCGAATCTAACTGTGAGAGGTTTCGATTTTATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - ccatgca
- - - - - - - - - - - -aatcata
- - - - - - - - - - - - - - - - - - - -cgaaaac