1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagaacatctctcttctctcttctctgtgattttggggttttgaatcaaattgttctttagggtttttgatgattcttcattttggtttctctgtttcttcttgtgtgtgtttgtgagttttaaaaatctcacctttatgtgtcaaaatgatttgatttgaaacagAAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGTTTGGCTCAGCGTGAAGAGATCATAAGAAGAACTGTCTATGTGTCTGATA
species | Arabidopsis thaliana |
transcript | AT4G10610.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG AAGAAGTCGTTCGGACAACAAGGGAAACGGGAGAATGAATCCTAEST: gi|86046066|gb|DR341821.1|DR341821
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGAAACGG-AGAATGAATCCTA
EST: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG AAGAAGTCGTTCEST: gi|86046042|gb|DR341797.1|DR341797
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTC
EST: TTATTGCTGCCGGAAATTTCCCCGTCAACGAAGACAGTAGCTTTCGTCGG AAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGTEST: gi|86046052|gb|DR341807.1|DR341807
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGT
EST: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG AAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGTEST: gi|86046043|gb|DR341798.1|DR341798
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGT
EST: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG AAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGTEST: gi|86046080|gb|DR341835.1|DR341835
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGT
EST: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG AAGA-GTCGTTCGGACAACAAGGGAAEST: gi|86046079|gb|DR341834.1|DR341834
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGAA
EST: TGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGGTAGCTTTCGTCGG AAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGTEST: gi|86046053|gb|DR341808.1|DR341808
genomic: TGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGG-TAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGT
EST: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG AAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGTEST: gi|116466690|gb|EG509282.1|EG509282
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGT
EST: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG AAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGTEST: gi|86046061|gb|DR341816.1|DR341816
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGT
EST: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG AAGAAGTCGTTCGGACAACAWGGGAAACGGAGAATGAATCCTAGGACAAGTEST: gi|86046074|gb|DR341829.1|DR341829
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGT
EST: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG AAGAAGTCGTTCGGACAACAAGGEST: gi|86046059|gb|DR341814.1|DR341814
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGG
EST: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG AAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGTEST: gi|86046075|gb|DR341830.1|DR341830
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGT
EST: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG AAGAAGTCGTTCGGACAACAAGGGAAACEST: gi|116466689|gb|EG509281.1|EG509281
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGAAAC
EST: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG AAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGTEST: gi|86046073|gb|DR341828.1|DR341828
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGT
EST: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG AAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAEST: gi|116412046|gb|EG454638.1|EG454638
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAA
EST: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG AAGAAGTCGTTCGGACAACAAGGGAAACGGAGGATGAATCCTAGGACAAGTEST: gi|86046076|gb|DR341831.1|DR341831
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGT
EST: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG AAAGAAAGTCGTTCGGACAACCAAGGGGAAACGGAGAATEST: gi|86046077|gb|DR341832.1|DR341832
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAA-GAA-GTCGTTCGGACAAC-AAGGG-AAACGGAGAAT
EST: TTGTTGSTGCCGGAAATTTCCCCGTCAASGAWGACGGTAGCTTTCGTCGG AAGAAGTCGTTCGGACAACAAGGGAEST: gi|86046050|gb|DR341805.1|DR341805
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGA
EST: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG AAGAAGTCGTTCGGACEST: gi|86046062|gb|DR341817.1|DR341817
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGAC
EST: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG AAGAAGTCGTTCGGACAACAAGGGAEST: gi|86046041|gb|DR341796.1|DR341796
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGA
EST: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG AAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGTEST: gi|86046040|gb|DR341795.1|DR341795
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGT
EST: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG AAGAAGTCGTTCGGACAACAAGGGAAACG-ANGAATGAATCCTAGGACAAGEST: gi|86046054|gb|DR341809.1|DR341809
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGAAACGGA-GAATGAATCCTAGGACAAG
EST: TTGTTGMTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG AAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGGAATCCTAGGACAAGEST: gi|86046063|gb|DR341818.1|DR341818
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATG-AATCCTAGGACAAG
EST: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGG AAGAAGTCGTTCGG
genomic: TTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGgtaagaacat ... tttgaaacagAAGAAGTCGTTCGG
ttgtgagttttaaaaatctcacctttatgtgtcaaaatgatttgatttgaaacagAAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGTTTGGCTCAGCGTGAAGAGATCATAAGAAGAACTGTCTATGTGTCTGATA
aaaatgatttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaacatctctcttctctcttctctgtgattttggggttttgaatcaaattgttctttagggtttttgatgattcttcattttggtttctctgtttcttcttgtgtgtgtttgtgagttttaaaaatctcacctttatgtgtcaaaatgatttgatttgaaacagAAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGTTTGGCTCAGCGTGAAGAGATCATAAGAAGAACTGTCTATGTGTCTGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
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