Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164202940|gb|ES188863.1|ES188863EST: GGTTTCGGCGCCGGTCTTATCGGAG GTGTAGGATTCGGACCAGGAGTTCCTGGATTACAATTTGGTCTTGGATTTG
genomic: GGTTTCGGCGCCGGTCTTATCGGAGgtaaatttct ... atgaaaacagGTGTAGGATTCGGACCAGGAGTTCCTGGATTACAATTTGGTCTTGGATTTG
EST:
gi|86019460|gb|DR315206.1|DR315206EST: TGGACTCGGTGTCGGTTGCGGATTTGGTTTCGGCGCCGGTCTTATCGGAG GTGTAGGATTCGGACCAGGAGTTCCTGGATTACAATTTGGTCTTGGATTTG
genomic: TGGACTCGGTGTCGGTTGCGGATTTGGTTTCGGCGCCGGTCTTATCGGAGgtaaatttct ... atgaaaacagGTGTAGGATTCGGACCAGGAGTTCCTGGATTACAATTTGGTCTTGGATTTG
EST:
gi|86019457|gb|DR315203.1|DR315203EST: TGGACTCGGTGTCGGTTGCGGATTTGGTTTCGGCGCCGGTCTTATCGGAG GTGTAGGATTCGGACCAGGAGTTCCTGGATTACAATTTGGTCTTGGATTTG
genomic: TGGACTCGGTGTCGGTTGCGGATTTGGTTTCGGCGCCGGTCTTATCGGAGgtaaatttct ... atgaaaacagGTGTAGGATTCGGACCAGGAGTTCCTGGATTACAATTTGGTCTTGGATTTG
EST:
gi|86019456|gb|DR315202.1|DR315202EST: TGGACTCGGTGTCGGTTGCGGATTTGGTTTCGGCGCCGGTCTTATCGGAG GTGTAGGATTCGGACCAGGAGTTCCTGGATTACAAATTTGGTCTTGGATTT
genomic: TGGACTCGGTGTCGGTTGCGGATTTGGTTTCGGCGCCGGTCTTATCGGAGgtaaatttct ... atgaaaacagGTGTAGGATTCGGACCAGGAGTTCCTGGATTACAA-TTTGGTCTTGGATTT
EST:
gi|86019458|gb|DR315204.1|DR315204EST: TGGACTCGGTGTCGGTTGCGGATTTGGTTTCGGCGCCGGTCTTATCGGAG GTGTAGGATTCGGACCAGGAGTTCCTGGATTACAATTTGGTCTTGGATTTG
genomic: TGGACTCGGTGTCGGTTGCGGATTTGGTTTCGGCGCCGGTCTTATCGGAGgtaaatttct ... atgaaaacagGTGTAGGATTCGGACCAGGAGTTCCTGGATTACAATTTGGTCTTGGATTTG
EST:
gi|86076310|gb|DR372067.1|DR372067EST: TGGACTCGGTGTCGGTTGCGGATTTGGTTTCGGCGCCGGTCTTATCGGAG GTGTAGGATTCGGACCAGGAGTTCCTGGATTACAATTTGGTCTTGGATTTG
genomic: TGGACTCGGTGTCGGTTGCGGATTTGGTTTCGGCGCCGGTCTTATCGGAGgtaaatttct ... atgaaaacagGTGTAGGATTCGGACCAGGAGTTCCTGGATTACAATTTGGTCTTGGATTTG
EST:
gi|86019459|gb|DR315205.1|DR315205EST: TGGACTCGGTGTCGGTTGCGGATTTGGTTTCGGCGCCGGTCTTATCGGAG GTGTAGGATTCGGACCAGGAGTTCCTGGATTACAATTTGGTCTTGGATTTG
genomic: TGGACTCGGTGTCGGTTGCGGATTTGGTTTCGGCGCCGGTCTTATCGGAGgtaaatttct ... atgaaaacagGTGTAGGATTCGGACCAGGAGTTCCTGGATTACAATTTGGTCTTGGATTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gctatttatagatagttttggtttaagagagtagagattggtttgatgaaaacagGTGTAGGATTCGGACCAGGAGTTCCTGGATTACAATTTGGTCTTGGATTTGGAGCTGGTTGTGGAATTGGTGTAGGTTTTGGCTATGGTGTTGGAAGAGG
gtttgat putative branch site (score: 5)
ttatagatagtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaatttctaatttctcccaattttgatcgcagactcgcgaatcgctcgaagctatttatagatagttttggtttaagagagtagagattggtttgatgaaaacagGTGTAGGATTCGGACCAGGAGTTCCTGGATTACAATTTGGTCTTGGATTTGGAGCTGGTTGTGGAATTGGTGTAGGTTTTGGCTATGGTGTTGGAAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG