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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaagtttcaatcttttttactgttttgtctccatggctttctacaagggttgattctcagtgtcttactgtgttacagGGATGTAATTTAGCTACCCATAAGTCGAATAATCGATTGGTGTTCTTTGACATGCTCATGGTTAAGTGTTCAG

Basic information

species Arabidopsis thaliana
transcript AT4G10090.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19874952|gb|AU235783.1|AU235783
EST:     TCGCTTTTGCTCGCCCTTTCTCTCATTATGATCGAATCTTGCGTAAACTG                         GGATGTAATTTAGCTACCCATAAGTCGAATAATCGATTGGTGTTCTTTGAC
genomic: TCGCTTTTGCTCGCCCTTTCTCTCATTATGATCGAATCTTGCGTAAACTGgtaaaagttt ... tgtgttacagGGATGTAATTTAGCTACCCATAAGTCGAATAATCGATTGGTGTTCTTTGAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtctccatggctttctacaagggttgattctcagtgtcttactgtgttacagGGATGTAATTTAGCTACCCATAAGTCGAATAATCGATTGGTGTTCTTTGACATGCTCATGGTTAAGTGTTCAG
                                      gtcttac  putative branch site (score: 3)
                                       tcttact  CT-rich tract