1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gttttgtttcttagactaaatgtattagatagatttctcagtttttgttctgtgtgtttgtagtgtgtggttataacacttaatttatcactattttcagGTATATTTTGAATCAAAAACAATGGCAGGGACTAAT
species | Arabidopsis thaliana |
transcript | AT4G08520.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTCTTCAGCTCAAAAAGCCATCTCAAAG GTATATTTTGAATCAAAAACAATGGCAGGGACTAATEST: gi|86024307|gb|DR320060.1|DR320060
genomic: CTTCTTCAGCTCAAAAAGCCATCTCAAAGgtaaaagttt ... ctattttcagGTATATTTTGAATCAAAAACAATGGCAGGGACTAAT
EST: GCAAGCTCTCATCTTCTTCAGCACAAAAAGCCATCTCAAAG GTATATTTTGAATCAAAAACAATGGCAGGGACTAATEST: gi|86024308|gb|DR320061.1|DR320061
genomic: GCAAGCTCTCATCTTCTTCAGCTCAAAAAGCCATCTCAAAGgtaaaagttt ... ctattttcagGTATATTTTGAATCAAAAACAATGGCAGGGACTAAT
EST: AAGCTCTCATCTTCTTCAGCACAAAAAGCCATCTCAAAG GTATATTTTGAATCAAAAACAATGGCAGGGACTAATEST: gi|86024309|gb|DR320062.1|DR320062
genomic: AAGCTCTCATCTTCTTCAGCTCAAAAAGCCATCTCAAAGgtaaaagttt ... ctattttcagGTATATTTTGAATCAAAAACAATGGCAGGGACTAAT
EST: AAGCTCTCATCTTCTTCAGCACAAAAAGCCATCTCAAAG GTATATTTTGAATCAAAAACAATGGCAGGGACTAATEST: gi|19875026|gb|AU235857.1|AU235857
genomic: AAGCTCTCATCTTCTTCAGCTCAAAAAGCCATCTCAAAGgtaaaagttt ... ctattttcagGTATATTTTGAATCAAAAACAATGGCAGGGACTAAT
EST: ATCTTCTTCAGCTCAAAAAGCCATCTCAAAG GTATATTTTGAATCAAAAACAATGGCAGGGACTAATEST: gi|164057057|gb|ES112577.1|ES112577
genomic: ATCTTCTTCAGCTCAAAAAGCCATCTCAAAGgtaaaagttt ... ctattttcagGTATATTTTGAATCAAAAACAATGGCAGGGACTAAT
EST: GCAAGCTCTCATCTTCTTCAGCTCAAAAAGCCATCTCAAAG GTATATTTTGAATCAAAAACAATGGCAGGGEST: gi|47828401|gb|CK118085.1|CK118085
genomic: GCAAGCTCTCATCTTCTTCAGCTCAAAAAGCCATCTCAAAGgtaaaagttt ... ctattttcagGTATATTTTGAATCAAAAACAATGGCAGGG
EST: CTCAAAAAGCCATCTCAAAG GTATATTTTGAATCAAAAACAATGGCAGGGACTAAT
genomic: CTCAAAAAGCCATCTCAAAGgtaaaagttt ... ctattttcagGTATATTTTGAATCAAAAACAATGGCAGGGACTAAT
tgttctgtgtgtttgtagtgtgtggttataacacttaatttatcactattttcagGTATATTTTGAATCAAAAACAATGGCAGGGACTAAT
ctattttc CT-rich tract
ttataacacttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttgtttcttagactaaatgtattagatagatttctcagtttttgttctgtgtgtttgtagtgtgtggttataacacttaatttatcactattttcagGTATATTTTGAATCAAAAACAATGGCAGGGACTAAT
gttttgt
- - - - - - -gactaaa
- - - - - - - - - - - - - - - - - ttctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataacac